Hb_079526_030

Information

Type -
Description -
Location Contig79526: 59375-64737
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24210g
description POPTRDRAFT_802322; hypothetical protein
nr
ID XP_012077249.1
description PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
swissprot
ID Q6AXU8
description Methyltransferase-like protein 6 OS=Rattus norvegicus GN=Mettl6 PE=2 SV=1
trembl
ID A0A067KGD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07644 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_079526_030 0.0 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
2 Hb_001089_110 0.0383811324 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000331_110 0.0499632138 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
4 Hb_001433_070 0.0515744364 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
5 Hb_003878_110 0.0632805904 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
6 Hb_001821_160 0.0634148181 - - serine/arginine rich splicing factor, putative [Ricinus communis]
7 Hb_000160_350 0.0638407579 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
8 Hb_183612_040 0.0660309737 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
9 Hb_000260_680 0.0664006428 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
10 Hb_002684_040 0.0675366458 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
11 Hb_022256_060 0.0677168711 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
12 Hb_000649_070 0.0686181332 - - PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 [Jatropha curcas]
13 Hb_005337_090 0.0692819347 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
14 Hb_000160_210 0.0704888182 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006355_010 0.0705611121 - - PREDICTED: protein NLRC3 [Jatropha curcas]
16 Hb_001227_030 0.071032448 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
17 Hb_000575_040 0.071944442 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
18 Hb_002175_030 0.0721982623 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
19 Hb_021576_100 0.073472509 - - Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis]
20 Hb_005965_030 0.0750455426 - - hypothetical protein JCGZ_16415 [Jatropha curcas]

Gene co-expression network

sample Hb_079526_030 Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_079526_030--Hb_001089_110 Hb_000331_110 Hb_000331_110 Hb_079526_030--Hb_000331_110 Hb_001433_070 Hb_001433_070 Hb_079526_030--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_079526_030--Hb_003878_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_001089_110--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_001089_110--Hb_005337_090 Hb_183612_040 Hb_183612_040 Hb_001089_110--Hb_183612_040 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_001089_110--Hb_000331_110 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_000331_110--Hb_003878_110 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_001433_070--Hb_003878_110 Hb_001433_070--Hb_183612_040 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_004785_100 Hb_004785_100 Hb_001821_160--Hb_004785_100 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_005965_030 Hb_005965_030 Hb_000160_350--Hb_005965_030 Hb_000640_310 Hb_000640_310 Hb_000160_350--Hb_000640_310 Hb_001799_050 Hb_001799_050 Hb_000160_350--Hb_001799_050 Hb_000771_180 Hb_000771_180 Hb_000160_350--Hb_000771_180 Hb_000160_350--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0333 8.06113 10.8069 4.5863 10.2865 10.3505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.9388 8.42444 5.10577 7.84083 6.64462

CAGE analysis