Hb_002110_230

Information

Type -
Description -
Location Contig2110: 182478-198158
Sequence    

Annotation

kegg
ID rcu:RCOM_1038030
description multidrug resistance pump, putative
nr
ID XP_012067938.1
description PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067KZ36
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_15844 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21876: 182550-183072 , PASA_asmbl_21878: 183721-184134 , PASA_asmbl_21879: 196473-198223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002110_230 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
2 Hb_001433_070 0.0600773335 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
3 Hb_005618_050 0.0759928385 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
4 Hb_000351_120 0.078865142 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
5 Hb_002918_030 0.0808866476 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
6 Hb_063716_100 0.0838997499 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
7 Hb_001040_100 0.0847139863 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
8 Hb_001214_060 0.0848948891 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
9 Hb_000331_110 0.0859899894 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
10 Hb_003438_050 0.0871793694 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
11 Hb_008103_070 0.087393219 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_001186_090 0.0876927713 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
13 Hb_004109_280 0.0881215111 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
14 Hb_002175_030 0.0891567678 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
15 Hb_002338_020 0.0892593455 - - PREDICTED: serine/arginine-rich splicing factor SR34A [Jatropha curcas]
16 Hb_009545_080 0.0904361502 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
17 Hb_032202_120 0.090716299 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
18 Hb_000174_110 0.0913874621 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
19 Hb_000245_220 0.0923106797 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
20 Hb_003878_110 0.0923629612 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]

Gene co-expression network

sample Hb_002110_230 Hb_002110_230 Hb_001433_070 Hb_001433_070 Hb_002110_230--Hb_001433_070 Hb_005618_050 Hb_005618_050 Hb_002110_230--Hb_005618_050 Hb_000351_120 Hb_000351_120 Hb_002110_230--Hb_000351_120 Hb_002918_030 Hb_002918_030 Hb_002110_230--Hb_002918_030 Hb_063716_100 Hb_063716_100 Hb_002110_230--Hb_063716_100 Hb_001040_100 Hb_001040_100 Hb_002110_230--Hb_001040_100 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_005588_090 Hb_005588_090 Hb_005618_050--Hb_005588_090 Hb_123915_040 Hb_123915_040 Hb_005618_050--Hb_123915_040 Hb_000035_470 Hb_000035_470 Hb_005618_050--Hb_000035_470 Hb_003375_070 Hb_003375_070 Hb_005618_050--Hb_003375_070 Hb_002073_190 Hb_002073_190 Hb_005618_050--Hb_002073_190 Hb_000351_120--Hb_063716_100 Hb_000351_120--Hb_001433_070 Hb_005337_090 Hb_005337_090 Hb_000351_120--Hb_005337_090 Hb_000020_150 Hb_000020_150 Hb_000351_120--Hb_000020_150 Hb_002684_040 Hb_002684_040 Hb_000351_120--Hb_002684_040 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_006120_070 Hb_006120_070 Hb_002918_030--Hb_006120_070 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_000417_130 Hb_000417_130 Hb_063716_100--Hb_000417_130 Hb_001357_250 Hb_001357_250 Hb_063716_100--Hb_001357_250 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180 Hb_001040_100--Hb_000035_470 Hb_003159_140 Hb_003159_140 Hb_001040_100--Hb_003159_140 Hb_004020_040 Hb_004020_040 Hb_001040_100--Hb_004020_040 Hb_004319_080 Hb_004319_080 Hb_001040_100--Hb_004319_080 Hb_003438_050 Hb_003438_050 Hb_001040_100--Hb_003438_050 Hb_002681_090 Hb_002681_090 Hb_001040_100--Hb_002681_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.803133 0.374925 0.836721 0.508394 0.963378 0.850931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.761872 0.709644 0.303922 0.801032 0.547529

CAGE analysis