Hb_006120_070

Information

Type -
Description -
Location Contig6120: 36366-41756
Sequence    

Annotation

kegg
ID vvi:100251751
description ER membrane protein complex subunit 6
nr
ID XP_012084121.1
description PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
swissprot
ID Q1ZXH4
description ER membrane protein complex subunit 6 OS=Dictyostelium discoideum GN=emc6 PE=3 SV=1
trembl
ID A0A067JVF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19036 PE=4 SV=1
Gene Ontology
ID GO:0072546
description er membrane protein complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51037: 36388-42268 , PASA_asmbl_51041: 35014-36508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006120_070 0.0 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
2 Hb_005697_060 0.0612436341 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
3 Hb_002918_030 0.0719830242 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
4 Hb_024847_010 0.076756252 - - UPF0586 C9orf41-like protein [Medicago truncatula]
5 Hb_001512_060 0.0788384427 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
6 Hb_000959_210 0.0801309659 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
7 Hb_001329_290 0.082261901 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
8 Hb_002253_100 0.0828954768 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
9 Hb_004449_170 0.0831116188 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
10 Hb_002687_130 0.0831496738 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
11 Hb_001635_180 0.0841102471 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
12 Hb_009421_020 0.0855541998 - - PREDICTED: caltractin-like [Jatropha curcas]
13 Hb_002154_120 0.0856816152 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
14 Hb_007163_070 0.0858819485 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
15 Hb_000236_240 0.0872432307 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
16 Hb_000465_090 0.0873069807 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
17 Hb_003935_020 0.0882003668 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_028227_020 0.0882306795 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
19 Hb_005588_030 0.0884657603 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
20 Hb_004093_090 0.0885952162 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]

Gene co-expression network

sample Hb_006120_070 Hb_006120_070 Hb_005697_060 Hb_005697_060 Hb_006120_070--Hb_005697_060 Hb_002918_030 Hb_002918_030 Hb_006120_070--Hb_002918_030 Hb_024847_010 Hb_024847_010 Hb_006120_070--Hb_024847_010 Hb_001512_060 Hb_001512_060 Hb_006120_070--Hb_001512_060 Hb_000959_210 Hb_000959_210 Hb_006120_070--Hb_000959_210 Hb_001329_290 Hb_001329_290 Hb_006120_070--Hb_001329_290 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_028227_020 Hb_028227_020 Hb_005697_060--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_003964_070 Hb_003964_070 Hb_024847_010--Hb_003964_070 Hb_001142_030 Hb_001142_030 Hb_024847_010--Hb_001142_030 Hb_024847_010--Hb_002918_030 Hb_001188_070 Hb_001188_070 Hb_024847_010--Hb_001188_070 Hb_003665_060 Hb_003665_060 Hb_024847_010--Hb_003665_060 Hb_010921_010 Hb_010921_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_120410_010 Hb_120410_010 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030 Hb_004449_170 Hb_004449_170 Hb_001329_290--Hb_004449_170 Hb_000286_070 Hb_000286_070 Hb_001329_290--Hb_000286_070 Hb_004787_060 Hb_004787_060 Hb_001329_290--Hb_004787_060 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.1249 25.9281 60.8751 36.9862 82.7901 65.224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.2775 93.5185 38.2251 48.7481 47.3446

CAGE analysis