Hb_000230_560

Information

Type -
Description -
Location Contig230: 538663-543506
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20660g
description POPTRDRAFT_420512; hypothetical protein
nr
ID XP_012069519.1
description PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
swissprot
ID Q9C0Y8
description UPF0613 protein PB24D3.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.06c PE=3 SV=1
trembl
ID A0A067KV56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02099 PE=4 SV=1
Gene Ontology
ID GO:0009507
description upf0613 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24084: 538965-541033 , PASA_asmbl_24085: 542175-542605 , PASA_asmbl_24086: 541807-543202 , PASA_asmbl_24087: 542825-543159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_560 0.0 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
2 Hb_002997_080 0.0518769738 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
3 Hb_003665_060 0.0528541986 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
4 Hb_000141_250 0.0545652397 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
5 Hb_003030_070 0.0560399297 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
6 Hb_007075_040 0.0571470675 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
7 Hb_000883_020 0.0587049758 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
8 Hb_008511_130 0.0590977197 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
9 Hb_003125_160 0.0591155991 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
10 Hb_009545_080 0.0601534455 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
11 Hb_000260_100 0.0627145919 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001369_180 0.0630005746 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
13 Hb_005357_080 0.0647928734 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
14 Hb_000618_040 0.0670322594 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
15 Hb_006620_020 0.0682510881 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_000853_230 0.0687240891 - - syntaxin, putative [Ricinus communis]
17 Hb_156973_010 0.0719856467 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001357_350 0.0724213888 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000879_200 0.0726834763 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
20 Hb_007317_110 0.0731357638 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_560 Hb_000230_560 Hb_002997_080 Hb_002997_080 Hb_000230_560--Hb_002997_080 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_000141_250--Hb_008511_130 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_001369_180 Hb_001369_180 Hb_003030_070--Hb_001369_180 Hb_002495_040 Hb_002495_040 Hb_003030_070--Hb_002495_040 Hb_003030_070--Hb_007317_110 Hb_002391_300 Hb_002391_300 Hb_003030_070--Hb_002391_300 Hb_005539_220 Hb_005539_220 Hb_007075_040--Hb_005539_220 Hb_007075_040--Hb_003665_060 Hb_156973_010 Hb_156973_010 Hb_007075_040--Hb_156973_010 Hb_000020_190 Hb_000020_190 Hb_007075_040--Hb_000020_190 Hb_007075_040--Hb_000883_020 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46807 2.8708 5.39739 4.42847 6.05728 7.26212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89635 5.31282 4.7979 3.6643 3.54186

CAGE analysis