Hb_004007_220

Information

Type -
Description -
Location Contig4007: 204796-216732
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09950g
description hypothetical protein
nr
ID XP_012079387.1
description PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
swissprot
ID O64816
description Casein kinase II subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g23070 PE=2 SV=1
trembl
ID A0A067KIG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12521 PE=4 SV=1
Gene Ontology
ID GO:0005829
description kinase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39881: 204803-216709
cDNA
(Sanger)
(ID:Location)		 002_K15.ab1: 207323-216709 , 003_M24.ab1: 207362-216709

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004007_220 0.0 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
2 Hb_002997_080 0.0593934993 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
3 Hb_001269_230 0.0632312432 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
4 Hb_027472_120 0.0684529647 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001047_220 0.0704824757 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
6 Hb_009646_030 0.0744452262 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002684_040 0.0748948291 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
8 Hb_017700_010 0.0750603985 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
9 Hb_002272_130 0.0794638963 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
10 Hb_004109_280 0.0799766286 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
11 Hb_002276_170 0.0809933976 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_007592_030 0.0813828455 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_000208_210 0.0814778312 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
14 Hb_001635_040 0.0815800541 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
15 Hb_000260_100 0.0815969375 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001005_030 0.0819783343 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
17 Hb_000777_050 0.0826674629 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
18 Hb_003813_040 0.0827865669 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
19 Hb_032986_010 0.0835493224 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
20 Hb_058999_030 0.0836418773 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004007_220 Hb_004007_220 Hb_002997_080 Hb_002997_080 Hb_004007_220--Hb_002997_080 Hb_001269_230 Hb_001269_230 Hb_004007_220--Hb_001269_230 Hb_027472_120 Hb_027472_120 Hb_004007_220--Hb_027472_120 Hb_001047_220 Hb_001047_220 Hb_004007_220--Hb_001047_220 Hb_009646_030 Hb_009646_030 Hb_004007_220--Hb_009646_030 Hb_002684_040 Hb_002684_040 Hb_004007_220--Hb_002684_040 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_000883_020 Hb_000883_020 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_001005_030 Hb_001005_030 Hb_001269_230--Hb_001005_030 Hb_001188_060 Hb_001188_060 Hb_001269_230--Hb_001188_060 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_000373_080 Hb_000373_080 Hb_001269_230--Hb_000373_080 Hb_001584_140 Hb_001584_140 Hb_001269_230--Hb_001584_140 Hb_002311_310 Hb_002311_310 Hb_027472_120--Hb_002311_310 Hb_027472_120--Hb_001005_030 Hb_001821_160 Hb_001821_160 Hb_027472_120--Hb_001821_160 Hb_150651_030 Hb_150651_030 Hb_027472_120--Hb_150651_030 Hb_000915_080 Hb_000915_080 Hb_027472_120--Hb_000915_080 Hb_000958_140 Hb_000958_140 Hb_001047_220--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001047_220--Hb_000462_060 Hb_034432_030 Hb_034432_030 Hb_001047_220--Hb_034432_030 Hb_001379_110 Hb_001379_110 Hb_001047_220--Hb_001379_110 Hb_138596_010 Hb_138596_010 Hb_001047_220--Hb_138596_010 Hb_000975_040 Hb_000975_040 Hb_001047_220--Hb_000975_040 Hb_006620_020 Hb_006620_020 Hb_009646_030--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_009646_030--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_009646_030--Hb_001926_030 Hb_000879_200 Hb_000879_200 Hb_009646_030--Hb_000879_200 Hb_009646_030--Hb_002997_080 Hb_002078_020 Hb_002078_020 Hb_009646_030--Hb_002078_020 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_003878_110 Hb_003878_110 Hb_002684_040--Hb_003878_110 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.801 27.7735 56.2695 35.5358 58.8047 58.4338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5696 31.8297 44.1985 31.7711 33.6369

CAGE analysis