Hb_001188_060

Information

Type -
Description -
Location Contig1188: 76603-79120
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05561: 77016-77557 , PASA_asmbl_05562: 77614-78025 , PASA_asmbl_05563: 78194-79663 , PASA_asmbl_05565: 78919-80441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001188_060 0.0 - - -
2 Hb_001269_230 0.0584174479 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
3 Hb_000208_260 0.0707716618 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
4 Hb_001205_250 0.0749531058 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
5 Hb_001584_140 0.0813784894 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
6 Hb_002398_030 0.0828662979 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_002248_110 0.0853246249 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
8 Hb_001005_030 0.0857049603 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
9 Hb_002836_140 0.0860572953 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
10 Hb_002073_190 0.086107653 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
11 Hb_000101_380 0.0878244122 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
12 Hb_058999_030 0.0881427992 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
13 Hb_000007_280 0.0891544163 - - hypothetical protein VITISV_000066 [Vitis vinifera]
14 Hb_002785_050 0.0901661225 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
15 Hb_002272_130 0.0911232974 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
16 Hb_109980_010 0.0911669668 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
17 Hb_009049_020 0.0912398514 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
18 Hb_000163_090 0.0913979259 - - gamma-tubulin complex component, putative [Ricinus communis]
19 Hb_001377_310 0.0916239234 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
20 Hb_000035_470 0.0925976856 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001188_060 Hb_001188_060 Hb_001269_230 Hb_001269_230 Hb_001188_060--Hb_001269_230 Hb_000208_260 Hb_000208_260 Hb_001188_060--Hb_000208_260 Hb_001205_250 Hb_001205_250 Hb_001188_060--Hb_001205_250 Hb_001584_140 Hb_001584_140 Hb_001188_060--Hb_001584_140 Hb_002398_030 Hb_002398_030 Hb_001188_060--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_001188_060--Hb_002248_110 Hb_001005_030 Hb_001005_030 Hb_001269_230--Hb_001005_030 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_000373_080 Hb_000373_080 Hb_001269_230--Hb_000373_080 Hb_001269_230--Hb_001584_140 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_058999_030 Hb_058999_030 Hb_000208_260--Hb_058999_030 Hb_000208_260--Hb_002398_030 Hb_000208_260--Hb_002248_110 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_001205_250--Hb_001584_140 Hb_000637_150 Hb_000637_150 Hb_001205_250--Hb_000637_150 Hb_001188_070 Hb_001188_070 Hb_001205_250--Hb_001188_070 Hb_000915_260 Hb_000915_260 Hb_001205_250--Hb_000915_260 Hb_017700_010 Hb_017700_010 Hb_001205_250--Hb_017700_010 Hb_001584_140--Hb_000637_150 Hb_000136_110 Hb_000136_110 Hb_001584_140--Hb_000136_110 Hb_000441_220 Hb_000441_220 Hb_001584_140--Hb_000441_220 Hb_001205_120 Hb_001205_120 Hb_001584_140--Hb_001205_120 Hb_001518_080 Hb_001518_080 Hb_001584_140--Hb_001518_080 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_002248_110--Hb_058999_030 Hb_002248_110--Hb_001269_230 Hb_002248_110--Hb_017700_010 Hb_004659_020 Hb_004659_020 Hb_002248_110--Hb_004659_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.13772 2.5447 6.66099 6.07528 5.69271 8.11353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32534 3.73481 3.47384 5.36919 5.13245

CAGE analysis