Hb_000445_050

Information

Type -
Description -
Location Contig445: 55079-63327
Sequence    

Annotation

kegg
ID rcu:RCOM_0562150
description topbp1, putative
nr
ID XP_012078317.1
description PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
swissprot
ID Q800K6
description DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A PE=1 SV=2
trembl
ID A0A067KCX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12150 PE=4 SV=1
Gene Ontology
ID GO:0006974
description dna topoisomerase 2-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42862: 54678-55733 , PASA_asmbl_42863: 56703-57049 , PASA_asmbl_42864: 57176-58461 , PASA_asmbl_42865: 58589-59643 , PASA_asmbl_42867: 61027-62328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_050 0.0 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
2 Hb_002398_030 0.0540602056 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_007592_030 0.0655761564 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_008120_030 0.0703834558 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
5 Hb_009049_020 0.0729411802 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
6 Hb_002942_060 0.0781582805 - - RNA-binding protein, putative [Ricinus communis]
7 Hb_058999_030 0.078905603 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
8 Hb_001227_130 0.0801747784 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
9 Hb_002836_140 0.0802115067 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
10 Hb_002876_320 0.0809860032 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
11 Hb_003813_040 0.0818917847 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
12 Hb_000351_120 0.0849455219 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]
13 Hb_007416_300 0.0849780602 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
14 Hb_000141_250 0.0852622331 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
15 Hb_002783_170 0.0857987054 - - PREDICTED: BRCA1-A complex subunit BRE isoform X2 [Jatropha curcas]
16 Hb_002272_130 0.0865544877 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
17 Hb_033642_030 0.0898228686 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
18 Hb_004007_220 0.0917464715 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
19 Hb_007951_040 0.0918271691 - - signal peptidase family protein [Populus trichocarpa]
20 Hb_002997_080 0.0936905264 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_050 Hb_000445_050 Hb_002398_030 Hb_002398_030 Hb_000445_050--Hb_002398_030 Hb_007592_030 Hb_007592_030 Hb_000445_050--Hb_007592_030 Hb_008120_030 Hb_008120_030 Hb_000445_050--Hb_008120_030 Hb_009049_020 Hb_009049_020 Hb_000445_050--Hb_009049_020 Hb_002942_060 Hb_002942_060 Hb_000445_050--Hb_002942_060 Hb_058999_030 Hb_058999_030 Hb_000445_050--Hb_058999_030 Hb_002398_030--Hb_008120_030 Hb_003549_090 Hb_003549_090 Hb_002398_030--Hb_003549_090 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_007592_030--Hb_058999_030 Hb_007592_030--Hb_002398_030 Hb_017700_010 Hb_017700_010 Hb_007592_030--Hb_017700_010 Hb_008120_030--Hb_001635_160 Hb_011310_210 Hb_011310_210 Hb_008120_030--Hb_011310_210 Hb_000777_050 Hb_000777_050 Hb_008120_030--Hb_000777_050 Hb_008120_030--Hb_003549_090 Hb_000345_380 Hb_000345_380 Hb_008120_030--Hb_000345_380 Hb_000208_260 Hb_000208_260 Hb_009049_020--Hb_000208_260 Hb_009049_020--Hb_002398_030 Hb_008120_010 Hb_008120_010 Hb_009049_020--Hb_008120_010 Hb_009049_020--Hb_058999_030 Hb_003688_090 Hb_003688_090 Hb_009049_020--Hb_003688_090 Hb_002942_060--Hb_002398_030 Hb_002942_060--Hb_008120_030 Hb_002942_060--Hb_000208_260 Hb_002942_060--Hb_058999_030 Hb_002942_060--Hb_007592_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_058999_030--Hb_017700_010 Hb_058999_030--Hb_003549_090 Hb_058999_030--Hb_000208_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.32217 1.58529 3.82278 3.4601 3.35743 4.11918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90643 1.6625 2.29787 2.2285 1.52942

CAGE analysis