Hb_000777_050

Information

Type -
Description -
Location Contig777: 28549-33340
Sequence    

Annotation

kegg
ID cic:CICLE_v10008422mg
description hypothetical protein
nr
ID XP_006451010.1
description hypothetical protein CICLE_v10008422mg [Citrus clementina]
swissprot
ID Q9C5U3
description 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=1 SV=1
trembl
ID A0A067GNV4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014743mg PE=3 SV=1
Gene Ontology
ID GO:0005634
description 26s protease regulatory subunit 8 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57858: 28553-33331
cDNA
(Sanger)
(ID:Location)		 052_C17.ab1: 28553-30844

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000777_050 0.0 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
2 Hb_002684_040 0.0540134409 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
3 Hb_011310_210 0.060705533 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
4 Hb_003549_090 0.061294323 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
5 Hb_028308_010 0.0626813456 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
6 Hb_001635_040 0.0639156141 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
7 Hb_002942_050 0.0644449003 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
8 Hb_011310_130 0.0675031075 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
9 Hb_008120_030 0.0675792293 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
10 Hb_007558_120 0.0684625042 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
11 Hb_002398_030 0.0686584236 - - amino acid binding protein, putative [Ricinus communis]
12 Hb_000084_250 0.0690267784 - - nucleolar phosphoprotein, putative [Ricinus communis]
13 Hb_006831_110 0.0692614657 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
14 Hb_019654_040 0.0697927817 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
15 Hb_009296_010 0.0713084503 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
16 Hb_001143_180 0.0715670578 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
17 Hb_003680_150 0.0728308983 - - srpk, putative [Ricinus communis]
18 Hb_000470_070 0.073028937 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
19 Hb_000162_030 0.0738216327 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
20 Hb_000648_100 0.0743244013 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000777_050 Hb_000777_050 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_003878_110 Hb_003878_110 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_008120_030 Hb_008120_030 Hb_011310_210--Hb_008120_030 Hb_011310_210--Hb_003549_090 Hb_011310_210--Hb_002942_050 Hb_011310_130 Hb_011310_130 Hb_011310_210--Hb_011310_130 Hb_000309_040 Hb_000309_040 Hb_011310_210--Hb_000309_040 Hb_002398_030 Hb_002398_030 Hb_003549_090--Hb_002398_030 Hb_003549_090--Hb_011310_130 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_058999_030 Hb_058999_030 Hb_003549_090--Hb_058999_030 Hb_001195_560 Hb_001195_560 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_000333_060 Hb_000333_060 Hb_028308_010--Hb_000333_060 Hb_028308_010--Hb_002398_030 Hb_001619_150 Hb_001619_150 Hb_028308_010--Hb_001619_150 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_002942_050--Hb_011310_130 Hb_003680_230 Hb_003680_230 Hb_002942_050--Hb_003680_230 Hb_002942_050--Hb_003549_090 Hb_001143_180 Hb_001143_180 Hb_002942_050--Hb_001143_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
91.7446 60.9712 65.2526 55.4726 78.6688 91.0451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.1474 32.9118 48.3239 48.3901 43.0847

CAGE analysis