Hb_058999_030

Information

Type -
Description -
Location Contig58999: 34222-47906
Sequence    

Annotation

kegg
ID rcu:RCOM_1753460
description katanin P80 subunit, putative (EC:2.3.1.48)
nr
ID XP_012077904.1
description PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q8H0T9
description Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
trembl
ID A0A067KDE7
description Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Jatropha curcas GN=JCGZ_13639 PE=3 SV=1
Gene Ontology
ID GO:0005874
description katanin p80 wd40 repeat-containing subunit b1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50149: 34643-47828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058999_030 0.0 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
2 Hb_002398_030 0.0608073037 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_002248_110 0.0629521013 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
4 Hb_017700_010 0.0650124277 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
5 Hb_003549_090 0.066961321 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
6 Hb_000208_260 0.0676467403 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
7 Hb_007592_030 0.0701087174 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_000107_210 0.0707298502 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
9 Hb_002836_140 0.0739081726 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
10 Hb_000007_280 0.0749015145 - - hypothetical protein VITISV_000066 [Vitis vinifera]
11 Hb_000101_380 0.0755191593 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
12 Hb_017295_010 0.0758736797 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_008120_030 0.0767367366 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
14 Hb_009049_020 0.0784811109 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
15 Hb_000445_050 0.078905603 - - PREDICTED: DNA topoisomerase 2-binding protein 1 [Jatropha curcas]
16 Hb_033642_030 0.0792178063 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
17 Hb_002876_320 0.080999846 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
18 Hb_004007_220 0.0836418773 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
19 Hb_000915_080 0.0842053506 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
20 Hb_002942_060 0.0849033284 - - RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_058999_030 Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_058999_030--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_000208_260 Hb_000208_260 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_003549_090 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_002248_110--Hb_000208_260 Hb_001269_230 Hb_001269_230 Hb_002248_110--Hb_001269_230 Hb_002248_110--Hb_017700_010 Hb_001188_060 Hb_001188_060 Hb_002248_110--Hb_001188_060 Hb_004659_020 Hb_004659_020 Hb_002248_110--Hb_004659_020 Hb_001047_220 Hb_001047_220 Hb_017700_010--Hb_001047_220 Hb_003964_070 Hb_003964_070 Hb_017700_010--Hb_003964_070 Hb_000101_380 Hb_000101_380 Hb_017700_010--Hb_000101_380 Hb_000313_260 Hb_000313_260 Hb_017700_010--Hb_000313_260 Hb_003018_130 Hb_003018_130 Hb_017700_010--Hb_003018_130 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_000208_260--Hb_002398_030 Hb_000208_260--Hb_001188_060 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_004994_040 Hb_004994_040 Hb_007592_030--Hb_004994_040 Hb_003813_040 Hb_003813_040 Hb_007592_030--Hb_003813_040 Hb_007592_030--Hb_000445_050 Hb_007592_030--Hb_002398_030 Hb_007592_030--Hb_017700_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0364 10.1673 17.2126 20.1516 20.4887 24.1438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4703 9.18621 12.3707 9.32029 11.9239

CAGE analysis