Hb_002248_110

Information

Type -
Description -
Location Contig2248: 104931-116447
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41050g
description hypothetical protein
nr
ID XP_006370258.1
description hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GXF4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41050g PE=4 SV=1
Gene Ontology
ID GO:0016740
description inner membrane protein oxaa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23364: 104986-105977 , PASA_asmbl_23365: 112607-112853 , PASA_asmbl_23368: 114402-133064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_110 0.0 - - hypothetical protein POPTR_0001s41050g [Populus trichocarpa]
2 Hb_058999_030 0.0629521013 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
3 Hb_000208_260 0.0769220834 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
4 Hb_001269_230 0.0817478763 - - PREDICTED: tRNA-splicing endonuclease subunit Sen54 [Jatropha curcas]
5 Hb_017700_010 0.0827809713 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
6 Hb_001188_060 0.0853246249 - - -
7 Hb_004659_020 0.0866622497 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
8 Hb_000007_280 0.0883021836 - - hypothetical protein VITISV_000066 [Vitis vinifera]
9 Hb_017295_010 0.0902356747 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
10 Hb_002785_050 0.0920394919 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
11 Hb_013726_080 0.0937516384 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
12 Hb_000208_210 0.0942270445 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
13 Hb_109980_010 0.0953643514 - - PREDICTED: uncharacterized protein LOC105647182 isoform X1 [Jatropha curcas]
14 Hb_005227_010 0.0977858922 - - PREDICTED: uncharacterized protein LOC105633453 isoform X1 [Jatropha curcas]
15 Hb_007062_020 0.0978110856 - - gcn4-complementing protein, putative [Ricinus communis]
16 Hb_006501_090 0.0978406255 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
17 Hb_001005_030 0.0980572655 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
18 Hb_004007_220 0.0985518066 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
19 Hb_003549_090 0.0989594973 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
20 Hb_000107_210 0.0992474104 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002248_110 Hb_002248_110 Hb_058999_030 Hb_058999_030 Hb_002248_110--Hb_058999_030 Hb_000208_260 Hb_000208_260 Hb_002248_110--Hb_000208_260 Hb_001269_230 Hb_001269_230 Hb_002248_110--Hb_001269_230 Hb_017700_010 Hb_017700_010 Hb_002248_110--Hb_017700_010 Hb_001188_060 Hb_001188_060 Hb_002248_110--Hb_001188_060 Hb_004659_020 Hb_004659_020 Hb_002248_110--Hb_004659_020 Hb_002398_030 Hb_002398_030 Hb_058999_030--Hb_002398_030 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_000208_260--Hb_002398_030 Hb_000208_260--Hb_001188_060 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_001005_030 Hb_001005_030 Hb_001269_230--Hb_001005_030 Hb_001269_230--Hb_001188_060 Hb_004007_220 Hb_004007_220 Hb_001269_230--Hb_004007_220 Hb_109980_010 Hb_109980_010 Hb_001269_230--Hb_109980_010 Hb_000373_080 Hb_000373_080 Hb_001269_230--Hb_000373_080 Hb_001584_140 Hb_001584_140 Hb_001269_230--Hb_001584_140 Hb_001047_220 Hb_001047_220 Hb_017700_010--Hb_001047_220 Hb_003964_070 Hb_003964_070 Hb_017700_010--Hb_003964_070 Hb_000101_380 Hb_000101_380 Hb_017700_010--Hb_000101_380 Hb_000313_260 Hb_000313_260 Hb_017700_010--Hb_000313_260 Hb_003018_130 Hb_003018_130 Hb_017700_010--Hb_003018_130 Hb_001205_250 Hb_001205_250 Hb_001188_060--Hb_001205_250 Hb_001188_060--Hb_001584_140 Hb_001188_060--Hb_002398_030 Hb_000004_030 Hb_000004_030 Hb_004659_020--Hb_000004_030 Hb_009529_030 Hb_009529_030 Hb_004659_020--Hb_009529_030 Hb_017295_010 Hb_017295_010 Hb_004659_020--Hb_017295_010 Hb_002785_050 Hb_002785_050 Hb_004659_020--Hb_002785_050 Hb_002273_120 Hb_002273_120 Hb_004659_020--Hb_002273_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57969 2.71403 5.40603 6.1275 6.31169 7.69752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13587 2.64993 4.59276 3.58935 4.52743

CAGE analysis