Hb_002785_050

Information

Type -
Description -
Location Contig2785: 57169-64802
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20070g
description POPTRDRAFT_1091918; hypothetical protein
nr
ID XP_012087962.1
description PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
swissprot
ID P44797
description Adenylosuccinate lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purB PE=3 SV=1
trembl
ID A0A067L8V9
description Adenylosuccinate lyase OS=Jatropha curcas GN=JCGZ_01332 PE=3 SV=1
Gene Ontology
ID GO:0004018
description adenylosuccinate lyase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29107: 57165-64805
cDNA
(Sanger)
(ID:Location)		 026_K15.ab1: 60527-64805

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002785_050 0.0 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
2 Hb_002273_120 0.0665131618 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
3 Hb_009529_030 0.0675078083 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
4 Hb_032050_040 0.0685669278 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
5 Hb_000830_030 0.0692642947 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
6 Hb_001882_050 0.0730657475 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
7 Hb_000260_330 0.0744663487 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
8 Hb_017700_010 0.0746281715 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
9 Hb_003671_010 0.0763814188 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
10 Hb_000116_500 0.0780625355 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
11 Hb_003683_020 0.078358865 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_017295_010 0.081837726 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
13 Hb_012053_080 0.083318992 - - AP-2 complex subunit alpha, putative [Ricinus communis]
14 Hb_014361_070 0.0834335415 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
15 Hb_004659_020 0.0860025307 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
16 Hb_056691_060 0.086315096 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
17 Hb_001025_080 0.086641004 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
18 Hb_000345_240 0.0867383794 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
19 Hb_003375_070 0.0868707031 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
20 Hb_015807_050 0.0871767293 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_002785_050 Hb_002785_050 Hb_002273_120 Hb_002273_120 Hb_002785_050--Hb_002273_120 Hb_009529_030 Hb_009529_030 Hb_002785_050--Hb_009529_030 Hb_032050_040 Hb_032050_040 Hb_002785_050--Hb_032050_040 Hb_000830_030 Hb_000830_030 Hb_002785_050--Hb_000830_030 Hb_001882_050 Hb_001882_050 Hb_002785_050--Hb_001882_050 Hb_000260_330 Hb_000260_330 Hb_002785_050--Hb_000260_330 Hb_002273_120--Hb_009529_030 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_032050_040--Hb_003010_020 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_008484_060 Hb_008484_060 Hb_000830_030--Hb_008484_060 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_000022_020 Hb_000022_020 Hb_000830_030--Hb_000022_020 Hb_056691_060 Hb_056691_060 Hb_000830_030--Hb_056691_060 Hb_001882_050--Hb_000260_330 Hb_001882_050--Hb_009529_030 Hb_003671_010 Hb_003671_010 Hb_001882_050--Hb_003671_010 Hb_001882_050--Hb_002273_120 Hb_003683_020 Hb_003683_020 Hb_001882_050--Hb_003683_020 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_000260_330--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2157 8.23809 9.13237 15.7103 16.3224 17.3966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.39829 9.36401 8.59216 12.6384 12.5698

CAGE analysis