Hb_000362_150

Information

Type -
Description -
Location Contig362: 138792-143343
Sequence    

Annotation

kegg
ID rcu:RCOM_1743950
description homogentisate 1,2-dioxygenase, putative (EC:1.13.11.5)
nr
ID XP_012074208.1
description PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
swissprot
ID Q9ZRA2
description Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2 SV=2
trembl
ID A0A067KVJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09830 PE=4 SV=1
Gene Ontology
ID GO:0016491
description homogentisate -dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37211: 139825-140493 , PASA_asmbl_37212: 140199-140454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_150 0.0 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
2 Hb_009529_030 0.067172336 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
3 Hb_001496_070 0.0753261979 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
4 Hb_152202_010 0.0795660451 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
5 Hb_000004_030 0.080556674 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
6 Hb_032050_040 0.0832786767 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
7 Hb_002493_020 0.0857238479 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
8 Hb_012194_050 0.0861125559 - - Aspartyl aminopeptidase, putative [Ricinus communis]
9 Hb_000300_050 0.0864335645 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001640_030 0.086700503 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
11 Hb_000780_190 0.0879788027 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
12 Hb_000785_040 0.0881384326 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
13 Hb_002273_120 0.0891320166 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
14 Hb_003010_020 0.0894172167 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000345_360 0.0894901684 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
16 Hb_000990_090 0.0905714421 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
17 Hb_007441_130 0.0908541413 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_172632_040 0.0908808411 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
19 Hb_001449_040 0.0911070024 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
20 Hb_007919_100 0.0917331971 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_150 Hb_000362_150 Hb_009529_030 Hb_009529_030 Hb_000362_150--Hb_009529_030 Hb_001496_070 Hb_001496_070 Hb_000362_150--Hb_001496_070 Hb_152202_010 Hb_152202_010 Hb_000362_150--Hb_152202_010 Hb_000004_030 Hb_000004_030 Hb_000362_150--Hb_000004_030 Hb_032050_040 Hb_032050_040 Hb_000362_150--Hb_032050_040 Hb_002493_020 Hb_002493_020 Hb_000362_150--Hb_002493_020 Hb_002273_120 Hb_002273_120 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_001496_070--Hb_002493_020 Hb_005901_020 Hb_005901_020 Hb_001496_070--Hb_005901_020 Hb_001449_040 Hb_001449_040 Hb_001496_070--Hb_001449_040 Hb_000983_150 Hb_000983_150 Hb_001496_070--Hb_000983_150 Hb_002974_060 Hb_002974_060 Hb_001496_070--Hb_002974_060 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_152202_010--Hb_032050_040 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210 Hb_000264_350 Hb_000264_350 Hb_000004_030--Hb_000264_350 Hb_000960_040 Hb_000960_040 Hb_000004_030--Hb_000960_040 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_032050_040--Hb_007919_100 Hb_003010_020 Hb_003010_020 Hb_032050_040--Hb_003010_020 Hb_032050_040--Hb_002273_120 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_005679_050 Hb_005679_050 Hb_002493_020--Hb_005679_050 Hb_004102_140 Hb_004102_140 Hb_002493_020--Hb_004102_140 Hb_004228_010 Hb_004228_010 Hb_002493_020--Hb_004228_010 Hb_172632_080 Hb_172632_080 Hb_002493_020--Hb_172632_080 Hb_004306_080 Hb_004306_080 Hb_002493_020--Hb_004306_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3375 6.15474 5.63145 13.4145 12.7725 18.4165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.17263 4.84573 8.33198 9.93873 14.3816

CAGE analysis