Hb_001898_210

Information

Type -
Description -
Location Contig1898: 178880-186301
Sequence    

Annotation

kegg
ID cmo:103491156
description shaggy-related protein kinase kappa
nr
ID XP_011028359.1
description PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
swissprot
ID Q39019
description Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=2
trembl
ID A0A0A0L197
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G308520 PE=4 SV=1
Gene Ontology
ID GO:0004674
description shaggy-related protein kinase kappa

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18842: 178885-186151 , PASA_asmbl_18843: 180601-181323 , PASA_asmbl_18844: 179223-180038
cDNA
(Sanger)
(ID:Location)		 022_L15.ab1: 184510-186151 , 033_H20.ab1: 184212-186140

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001898_210 0.0 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
2 Hb_172632_040 0.0759209527 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 isoform X1 [Amborella trichopoda]
3 Hb_009328_020 0.0816355558 - - conserved hypothetical protein [Ricinus communis]
4 Hb_152202_010 0.0852260773 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
5 Hb_000479_250 0.0884253846 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
6 Hb_001279_030 0.0934345096 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
7 Hb_000022_020 0.0965930784 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
8 Hb_000056_130 0.0971129141 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
9 Hb_011486_040 0.0975702662 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
10 Hb_007919_100 0.0984309126 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
11 Hb_004531_140 0.0985412106 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
12 Hb_000915_260 0.0996879681 - - PREDICTED: uncharacterized protein LOC105628514 isoform X1 [Jatropha curcas]
13 Hb_002496_020 0.1041445671 - - DNA binding protein, putative [Ricinus communis]
14 Hb_000181_130 0.1051115543 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001640_030 0.1066413734 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
16 Hb_003544_160 0.1077214584 - - -
17 Hb_000300_050 0.1078465761 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011214_090 0.1082563899 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
19 Hb_011228_010 0.1091411721 - - PREDICTED: vacuolar protein sorting-associated protein 54, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_032050_040 0.1092411906 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]

Gene co-expression network

sample Hb_001898_210 Hb_001898_210 Hb_172632_040 Hb_172632_040 Hb_001898_210--Hb_172632_040 Hb_009328_020 Hb_009328_020 Hb_001898_210--Hb_009328_020 Hb_152202_010 Hb_152202_010 Hb_001898_210--Hb_152202_010 Hb_000479_250 Hb_000479_250 Hb_001898_210--Hb_000479_250 Hb_001279_030 Hb_001279_030 Hb_001898_210--Hb_001279_030 Hb_000022_020 Hb_000022_020 Hb_001898_210--Hb_000022_020 Hb_000139_370 Hb_000139_370 Hb_172632_040--Hb_000139_370 Hb_000915_260 Hb_000915_260 Hb_172632_040--Hb_000915_260 Hb_000362_150 Hb_000362_150 Hb_172632_040--Hb_000362_150 Hb_000254_090 Hb_000254_090 Hb_172632_040--Hb_000254_090 Hb_000110_190 Hb_000110_190 Hb_172632_040--Hb_000110_190 Hb_000181_130 Hb_000181_130 Hb_009328_020--Hb_000181_130 Hb_009328_020--Hb_000479_250 Hb_109000_020 Hb_109000_020 Hb_009328_020--Hb_109000_020 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_012194_050 Hb_012194_050 Hb_152202_010--Hb_012194_050 Hb_032050_040 Hb_032050_040 Hb_152202_010--Hb_032050_040 Hb_152202_010--Hb_000362_150 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_006274_030 Hb_006274_030 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_001366_180 Hb_001366_180 Hb_000479_250--Hb_001366_180 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_011228_010 Hb_011228_010 Hb_001279_030--Hb_011228_010 Hb_005291_050 Hb_005291_050 Hb_001279_030--Hb_005291_050 Hb_006501_090 Hb_006501_090 Hb_001279_030--Hb_006501_090 Hb_000181_240 Hb_000181_240 Hb_001279_030--Hb_000181_240 Hb_000039_150 Hb_000039_150 Hb_001279_030--Hb_000039_150 Hb_015807_050 Hb_015807_050 Hb_001279_030--Hb_015807_050 Hb_002414_050 Hb_002414_050 Hb_000022_020--Hb_002414_050 Hb_000830_030 Hb_000830_030 Hb_000022_020--Hb_000830_030 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000022_020--Hb_004452_110 Hb_001662_100 Hb_001662_100 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2266 11.9305 27.0004 45.3438 31.9613 47.0097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5036 18.1941 28.1232 25.0251 52.3749

CAGE analysis