Hb_000181_130

Information

Type -
Description -
Location Contig181: 88415-100665
Sequence    

Annotation

kegg
ID rcu:RCOM_0762330
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002532933.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O61122
description Serine/threonine-protein kinase svkA OS=Dictyostelium discoideum GN=svkA PE=1 SV=1
trembl
ID B9T3W4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0762330 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase 24 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17503: 88440-109956 , PASA_asmbl_17504: 88440-109956
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_130 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_009328_020 0.0579430748 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000594_050 0.0694773539 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
4 Hb_000621_010 0.0702777264 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
5 Hb_054865_150 0.0708707006 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
6 Hb_065500_060 0.073586274 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
7 Hb_008847_030 0.0764189531 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
8 Hb_007672_060 0.0787074072 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
9 Hb_009898_050 0.0788623418 - - PREDICTED: beta-taxilin [Jatropha curcas]
10 Hb_109000_020 0.0818931811 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_000479_250 0.0821384045 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
12 Hb_004531_140 0.0827205674 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
13 Hb_002641_060 0.0828440094 - - prefoldin subunit, putative [Ricinus communis]
14 Hb_002811_180 0.0841379593 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008616_050 0.0842642655 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
16 Hb_001021_150 0.0843867674 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
17 Hb_000331_260 0.0844397473 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
18 Hb_000830_030 0.0844544376 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
19 Hb_006153_070 0.0847861596 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
20 Hb_004109_080 0.0850980586 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000181_130 Hb_000181_130 Hb_009328_020 Hb_009328_020 Hb_000181_130--Hb_009328_020 Hb_000594_050 Hb_000594_050 Hb_000181_130--Hb_000594_050 Hb_000621_010 Hb_000621_010 Hb_000181_130--Hb_000621_010 Hb_054865_150 Hb_054865_150 Hb_000181_130--Hb_054865_150 Hb_065500_060 Hb_065500_060 Hb_000181_130--Hb_065500_060 Hb_008847_030 Hb_008847_030 Hb_000181_130--Hb_008847_030 Hb_000479_250 Hb_000479_250 Hb_009328_020--Hb_000479_250 Hb_109000_020 Hb_109000_020 Hb_009328_020--Hb_109000_020 Hb_002289_080 Hb_002289_080 Hb_009328_020--Hb_002289_080 Hb_001898_210 Hb_001898_210 Hb_009328_020--Hb_001898_210 Hb_009898_050 Hb_009898_050 Hb_009328_020--Hb_009898_050 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000107_230 Hb_000107_230 Hb_000594_050--Hb_000107_230 Hb_006588_170 Hb_006588_170 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060 Hb_000621_010--Hb_008847_030 Hb_000621_010--Hb_002811_180 Hb_003938_090 Hb_003938_090 Hb_000621_010--Hb_003938_090 Hb_005054_090 Hb_005054_090 Hb_000621_010--Hb_005054_090 Hb_005504_060 Hb_005504_060 Hb_000621_010--Hb_005504_060 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_003226_140 Hb_003226_140 Hb_065500_060--Hb_003226_140 Hb_000883_020 Hb_000883_020 Hb_065500_060--Hb_000883_020 Hb_000342_130 Hb_000342_130 Hb_065500_060--Hb_000342_130 Hb_009545_080 Hb_009545_080 Hb_065500_060--Hb_009545_080 Hb_000331_260 Hb_000331_260 Hb_065500_060--Hb_000331_260 Hb_001021_150 Hb_001021_150 Hb_008847_030--Hb_001021_150 Hb_008847_030--Hb_003938_090 Hb_003416_010 Hb_003416_010 Hb_008847_030--Hb_003416_010 Hb_000905_110 Hb_000905_110 Hb_008847_030--Hb_000905_110 Hb_008847_030--Hb_002641_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35371 3.67301 6.09143 8.18316 7.415 9.7279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.22688 7.80359 5.76158 5.81543 8.12696

CAGE analysis