Hb_000342_130

Information

Type -
Description -
Location Contig342: 150164-153259
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24890g
description POPTRDRAFT_819511; hypothetical protein
nr
ID XP_012077323.1
description PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07695 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35750: 150159-152962 , PASA_asmbl_35751: 150585-150722
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000342_130 0.0 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
2 Hb_000120_790 0.0553863206 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
3 Hb_004841_010 0.0694106041 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
4 Hb_000173_290 0.0721232333 - - guanylate kinase, putative [Ricinus communis]
5 Hb_065500_060 0.072479001 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
6 Hb_000883_020 0.0738645185 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_000331_260 0.0766252999 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
8 Hb_000777_040 0.0779937852 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
9 Hb_002518_280 0.0784096144 - - phosphate transporter [Manihot esculenta]
10 Hb_005697_060 0.0799360189 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
11 Hb_001135_220 0.0805093291 - - FGFR1 oncogene partner, putative [Ricinus communis]
12 Hb_000025_640 0.0810376122 - - PREDICTED: probable magnesium transporter NIPA6 isoform X1 [Jatropha curcas]
13 Hb_007163_070 0.0811692963 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
14 Hb_001776_140 0.0818571953 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_007632_030 0.0830040673 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
16 Hb_000010_330 0.0848276226 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
17 Hb_004414_060 0.0849269846 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
18 Hb_000054_090 0.0854626813 - - zinc finger protein, putative [Ricinus communis]
19 Hb_002805_270 0.0856187716 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000690_130 0.0858252177 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]

Gene co-expression network

sample Hb_000342_130 Hb_000342_130 Hb_000120_790 Hb_000120_790 Hb_000342_130--Hb_000120_790 Hb_004841_010 Hb_004841_010 Hb_000342_130--Hb_004841_010 Hb_000173_290 Hb_000173_290 Hb_000342_130--Hb_000173_290 Hb_065500_060 Hb_065500_060 Hb_000342_130--Hb_065500_060 Hb_000883_020 Hb_000883_020 Hb_000342_130--Hb_000883_020 Hb_000331_260 Hb_000331_260 Hb_000342_130--Hb_000331_260 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_023386_020 Hb_023386_020 Hb_004841_010--Hb_023386_020 Hb_008643_210 Hb_008643_210 Hb_004841_010--Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_003226_140 Hb_003226_140 Hb_065500_060--Hb_003226_140 Hb_065500_060--Hb_000883_020 Hb_000181_130 Hb_000181_130 Hb_065500_060--Hb_000181_130 Hb_009545_080 Hb_009545_080 Hb_065500_060--Hb_009545_080 Hb_065500_060--Hb_000331_260 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3825 6.5492 10.9975 9.28388 18.1167 16.7511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7051 17.3684 14.5191 9.14955 12.7137

CAGE analysis