Hb_004143_060

Information

Type -
Description -
Location Contig4143: 31442-40537
Sequence    

Annotation

kegg
ID rcu:RCOM_1039610
description DNA binding protein, putative
nr
ID XP_002514048.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID P70371
description Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1 SV=1
trembl
ID B9RJX9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1039610 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41023: 31964-32152 , PASA_asmbl_41025: 33364-40240 , PASA_asmbl_41028: 37748-38002 , PASA_asmbl_41029: 40304-40470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004143_060 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000331_260 0.0461132311 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
3 Hb_016172_020 0.0546590701 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
4 Hb_007390_010 0.062933579 - - catalytic, putative [Ricinus communis]
5 Hb_011037_030 0.0630635977 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
6 Hb_000696_330 0.0671424994 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
7 Hb_000215_110 0.0682184813 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
8 Hb_011386_010 0.0684166686 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_000035_180 0.0688925008 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
10 Hb_156279_020 0.0691502021 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
11 Hb_000156_010 0.0700957726 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
12 Hb_007575_050 0.0705367573 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
13 Hb_010618_010 0.0710130602 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
14 Hb_000028_480 0.0714531825 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
15 Hb_002078_350 0.0715239795 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
16 Hb_000092_170 0.0715988264 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_110291_010 0.072020669 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009218_010 0.0723053172 - - PREDICTED: uncharacterized protein LOC105636602 isoform X1 [Jatropha curcas]
19 Hb_008406_200 0.0732131141 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
20 Hb_054865_150 0.0733220086 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]

Gene co-expression network

sample Hb_004143_060 Hb_004143_060 Hb_000331_260 Hb_000331_260 Hb_004143_060--Hb_000331_260 Hb_016172_020 Hb_016172_020 Hb_004143_060--Hb_016172_020 Hb_007390_010 Hb_007390_010 Hb_004143_060--Hb_007390_010 Hb_011037_030 Hb_011037_030 Hb_004143_060--Hb_011037_030 Hb_000696_330 Hb_000696_330 Hb_004143_060--Hb_000696_330 Hb_000215_110 Hb_000215_110 Hb_004143_060--Hb_000215_110 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_000331_260--Hb_011037_030 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_008643_210 Hb_008643_210 Hb_016172_020--Hb_008643_210 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_001599_040 Hb_001599_040 Hb_007390_010--Hb_001599_040 Hb_001279_150 Hb_001279_150 Hb_007390_010--Hb_001279_150 Hb_007390_010--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_007390_010--Hb_008847_030 Hb_001021_150 Hb_001021_150 Hb_007390_010--Hb_001021_150 Hb_000156_010 Hb_000156_010 Hb_011037_030--Hb_000156_010 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_054865_150 Hb_054865_150 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_000078_120 Hb_000078_120 Hb_000696_330--Hb_000078_120 Hb_011386_010 Hb_011386_010 Hb_000696_330--Hb_011386_010 Hb_002078_350 Hb_002078_350 Hb_000696_330--Hb_002078_350 Hb_000696_330--Hb_000331_260 Hb_001168_020 Hb_001168_020 Hb_000696_330--Hb_001168_020 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_000215_110--Hb_001279_150 Hb_000580_180 Hb_000580_180 Hb_000215_110--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.01183 7.29404 7.23244 7.14555 6.99154 13.6178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.96946 10.9655 9.86228 8.46294 9.16645

CAGE analysis