Hb_000156_010

Information

Type -
Description -
Location Contig156: 4473-10496
Sequence    

Annotation

kegg
ID rcu:RCOM_0593760
description phospho-n-acetylmuramoyl-pentapeptide-transferase, putative (EC:2.7.8.13)
nr
ID XP_002532536.1
description phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
swissprot
ID O49730
description Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog OS=Arabidopsis thaliana GN=ATTRANS 11 PE=2 SV=3
trembl
ID B9T2R7
description Phospho-n-acetylmuramoyl-pentapeptide-transferase, putative OS=Ricinus communis GN=RCOM_0593760 PE=4 SV=1
Gene Ontology
ID GO:0016020
description phospho-n-acetylmuramoyl-pentapeptide-transferase homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13526: 4554-7546 , PASA_asmbl_13527: 8644-9103 , PASA_asmbl_13528: 9152-10407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000156_010 0.0 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
2 Hb_011037_030 0.0382582126 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
3 Hb_003750_050 0.0475678706 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
4 Hb_054865_150 0.0516620838 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
5 Hb_012498_010 0.0545267391 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
6 Hb_105328_020 0.0578189036 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
7 Hb_005291_050 0.0578658667 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
8 Hb_006455_120 0.0592225056 - - n6-DNA-methyltransferase, putative [Ricinus communis]
9 Hb_006634_070 0.060607023 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
10 Hb_000830_030 0.0619425061 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
11 Hb_000254_090 0.063054472 - - PREDICTED: la protein 2 [Jatropha curcas]
12 Hb_000640_170 0.0636923526 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
13 Hb_168978_030 0.065107468 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
14 Hb_000665_060 0.0676161819 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
15 Hb_007479_040 0.0683223435 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002110_190 0.0690118316 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
17 Hb_000331_260 0.0691291758 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
18 Hb_000120_670 0.0699852657 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
19 Hb_004143_060 0.0700957726 - - DNA binding protein, putative [Ricinus communis]
20 Hb_026198_070 0.0704221791 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_000156_010 Hb_000156_010 Hb_011037_030 Hb_011037_030 Hb_000156_010--Hb_011037_030 Hb_003750_050 Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_054865_150 Hb_054865_150 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_011037_030--Hb_105328_020 Hb_011037_030--Hb_003750_050 Hb_000120_670 Hb_000120_670 Hb_003750_050--Hb_000120_670 Hb_001279_150 Hb_001279_150 Hb_003750_050--Hb_001279_150 Hb_002811_180 Hb_002811_180 Hb_003750_050--Hb_002811_180 Hb_003750_050--Hb_054865_150 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_005291_050 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_000170_090 Hb_000170_090 Hb_105328_020--Hb_000170_090 Hb_105328_020--Hb_000345_380 Hb_006588_170 Hb_006588_170 Hb_105328_020--Hb_006588_170 Hb_013399_020 Hb_013399_020 Hb_105328_020--Hb_013399_020 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_005291_050--Hb_004109_080 Hb_002263_020 Hb_002263_020 Hb_005291_050--Hb_002263_020 Hb_005291_050--Hb_000254_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80189 3.24724 3.7143 5.64133 4.08921 6.62624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09623 4.61196 4.9297 5.10084 4.55317

CAGE analysis