Hb_003683_020

Information

Type -
Description -
Location Contig3683: 16486-22800
Sequence    

Annotation

kegg
ID rcu:RCOM_1619090
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_002512018.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID P57760
description Serine/threonine-protein kinase 16 OS=Rattus norvegicus GN=Stk16 PE=2 SV=2
trembl
ID B9RE79
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1619090 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37867: 16604-22659 , PASA_asmbl_37868: 19068-19290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003683_020 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_012498_010 0.0474824707 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
3 Hb_010142_020 0.0571341988 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013399_020 0.059492752 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
5 Hb_003528_030 0.0603713308 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
6 Hb_000159_090 0.0618721769 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
7 Hb_000260_330 0.0624821395 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
8 Hb_007481_010 0.0628623438 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
9 Hb_002989_020 0.0634759806 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
10 Hb_002728_080 0.0648477597 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_011063_050 0.0676316425 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
12 Hb_001500_140 0.0681804065 - - pelota, putative [Ricinus communis]
13 Hb_000352_300 0.0690274462 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
14 Hb_028512_020 0.0692731492 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
15 Hb_002110_190 0.0695813302 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
16 Hb_003671_010 0.0707413219 - - PREDICTED: protein transport protein SFT2 isoform X1 [Jatropha curcas]
17 Hb_000213_010 0.0709258486 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
18 Hb_004109_080 0.0709538129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
19 Hb_000923_010 0.0713680983 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
20 Hb_004990_010 0.0715144504 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003683_020 Hb_003683_020 Hb_012498_010 Hb_012498_010 Hb_003683_020--Hb_012498_010 Hb_010142_020 Hb_010142_020 Hb_003683_020--Hb_010142_020 Hb_013399_020 Hb_013399_020 Hb_003683_020--Hb_013399_020 Hb_003528_030 Hb_003528_030 Hb_003683_020--Hb_003528_030 Hb_000159_090 Hb_000159_090 Hb_003683_020--Hb_000159_090 Hb_000260_330 Hb_000260_330 Hb_003683_020--Hb_000260_330 Hb_004109_080 Hb_004109_080 Hb_012498_010--Hb_004109_080 Hb_005291_050 Hb_005291_050 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_004567_090 Hb_004567_090 Hb_012498_010--Hb_004567_090 Hb_012498_010--Hb_010142_020 Hb_011063_050 Hb_011063_050 Hb_010142_020--Hb_011063_050 Hb_002989_020 Hb_002989_020 Hb_010142_020--Hb_002989_020 Hb_000614_240 Hb_000614_240 Hb_010142_020--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_010142_020--Hb_001500_140 Hb_000140_290 Hb_000140_290 Hb_010142_020--Hb_000140_290 Hb_000170_090 Hb_000170_090 Hb_013399_020--Hb_000170_090 Hb_000923_010 Hb_000923_010 Hb_013399_020--Hb_000923_010 Hb_105328_020 Hb_105328_020 Hb_013399_020--Hb_105328_020 Hb_000441_220 Hb_000441_220 Hb_013399_020--Hb_000441_220 Hb_093458_040 Hb_093458_040 Hb_013399_020--Hb_093458_040 Hb_007481_010 Hb_007481_010 Hb_003528_030--Hb_007481_010 Hb_000352_300 Hb_000352_300 Hb_003528_030--Hb_000352_300 Hb_003528_030--Hb_012498_010 Hb_000477_050 Hb_000477_050 Hb_003528_030--Hb_000477_050 Hb_004990_010 Hb_004990_010 Hb_003528_030--Hb_004990_010 Hb_007638_030 Hb_007638_030 Hb_000159_090--Hb_007638_030 Hb_000140_280 Hb_000140_280 Hb_000159_090--Hb_000140_280 Hb_000159_090--Hb_012498_010 Hb_008970_030 Hb_008970_030 Hb_000159_090--Hb_008970_030 Hb_010964_040 Hb_010964_040 Hb_000159_090--Hb_010964_040 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_000260_330--Hb_000923_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0757 10.8996 10.9535 21.4531 14.9259 16.0235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6861 11.2447 12.9688 16.7979 13.1027

CAGE analysis