Hb_002078_350

Information

Type -
Description -
Location Contig2078: 252415-255776
Sequence    

Annotation

kegg
ID cit:102611103
description ranBP2-type zinc finger protein At1g67325-like
nr
ID KJB30897.1
description hypothetical protein B456_005G166600 [Gossypium raimondii]
swissprot
ID Q8GZ43
description RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis thaliana GN=At1g67325 PE=1 SV=1
trembl
ID A0A0D2NE17
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G166600 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ranbp2-type zinc finger protein at1g67325-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21462: 252410-256071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_350 0.0 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
2 Hb_011386_010 0.0460271207 - - mitochondrial carrier protein, putative [Ricinus communis]
3 Hb_156279_020 0.052938592 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
4 Hb_000373_070 0.0572604638 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
5 Hb_006831_140 0.0585567569 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
6 Hb_001470_030 0.0586379053 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
7 Hb_000035_180 0.0590865553 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
8 Hb_000331_550 0.0599122239 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
9 Hb_000078_120 0.0599726559 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
10 Hb_000146_070 0.0602030081 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
11 Hb_000215_110 0.0614849026 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
12 Hb_005054_110 0.0634302272 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
13 Hb_007479_040 0.0659430142 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000092_170 0.0665975653 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_000684_470 0.0666386356 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
16 Hb_000696_330 0.0674870704 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]
17 Hb_008725_230 0.0676655664 - - PREDICTED: CTP synthase [Jatropha curcas]
18 Hb_000680_160 0.0680032048 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
19 Hb_002110_190 0.0689736363 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
20 Hb_002518_260 0.0694327049 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_002078_350 Hb_002078_350 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_156279_020 Hb_156279_020 Hb_002078_350--Hb_156279_020 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_000035_180 Hb_000035_180 Hb_002078_350--Hb_000035_180 Hb_005054_110 Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_000329_710 Hb_000329_710 Hb_011386_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_011386_010--Hb_002518_260 Hb_011386_010--Hb_156279_020 Hb_000792_010 Hb_000792_010 Hb_011386_010--Hb_000792_010 Hb_000331_260 Hb_000331_260 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_156279_020--Hb_000035_180 Hb_003151_040 Hb_003151_040 Hb_000373_070--Hb_003151_040 Hb_000215_110 Hb_000215_110 Hb_000373_070--Hb_000215_110 Hb_005846_040 Hb_005846_040 Hb_000373_070--Hb_005846_040 Hb_001163_050 Hb_001163_050 Hb_000373_070--Hb_001163_050 Hb_000373_070--Hb_000331_550 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001876_050 Hb_001876_050 Hb_006831_140--Hb_001876_050 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_001030_020 Hb_001030_020 Hb_001470_030--Hb_001030_020 Hb_003938_090 Hb_003938_090 Hb_001470_030--Hb_003938_090 Hb_010423_030 Hb_010423_030 Hb_001470_030--Hb_010423_030 Hb_000152_500 Hb_000152_500 Hb_001470_030--Hb_000152_500 Hb_001470_030--Hb_000373_070 Hb_000146_070 Hb_000146_070 Hb_000035_180--Hb_000146_070 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000340_180 Hb_000340_180 Hb_000035_180--Hb_000340_180 Hb_000035_180--Hb_000331_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.76789 10.1944 8.0272 9.79155 9.02333 12.3958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0928 15.3908 12.0178 12.0456 9.90901

CAGE analysis