Hb_001876_050

Information

Type -
Description -
Location Contig1876: 31225-35777
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06670g
description POPTRDRAFT_1084600; hypothetical protein
nr
ID KDP44786.1
description hypothetical protein JCGZ_01286 [Jatropha curcas]
swissprot
ID O04209
description Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
trembl
ID A0A067L8L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01286 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin light chain 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18498: 31291-35775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001876_050 0.0 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
2 Hb_007416_120 0.0431456314 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
3 Hb_001671_100 0.0488870876 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
4 Hb_004324_130 0.0520071583 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_001999_310 0.0544218262 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
6 Hb_006831_140 0.0554415619 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
7 Hb_002456_010 0.0583978791 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
8 Hb_000556_120 0.0608434724 - - Spastin, putative [Ricinus communis]
9 Hb_000138_100 0.0611620211 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
10 Hb_001301_150 0.0614318054 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
11 Hb_000111_290 0.0654078729 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
12 Hb_000181_400 0.0662658698 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
13 Hb_000329_800 0.0672707093 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004567_090 0.0672834011 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
15 Hb_029243_030 0.0674958633 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
16 Hb_000406_200 0.0675013602 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
17 Hb_000078_120 0.0680253484 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
18 Hb_001500_140 0.0684202296 - - pelota, putative [Ricinus communis]
19 Hb_000352_310 0.0694860157 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
20 Hb_000173_280 0.0703756515 - - Speckle-type POZ protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001876_050 Hb_001876_050 Hb_007416_120 Hb_007416_120 Hb_001876_050--Hb_007416_120 Hb_001671_100 Hb_001671_100 Hb_001876_050--Hb_001671_100 Hb_004324_130 Hb_004324_130 Hb_001876_050--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_001876_050--Hb_001999_310 Hb_006831_140 Hb_006831_140 Hb_001876_050--Hb_006831_140 Hb_002456_010 Hb_002456_010 Hb_001876_050--Hb_002456_010 Hb_007416_120--Hb_001671_100 Hb_007416_120--Hb_004324_130 Hb_007416_120--Hb_001999_310 Hb_000181_400 Hb_000181_400 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290 Hb_001671_100--Hb_001999_310 Hb_002232_360 Hb_002232_360 Hb_001671_100--Hb_002232_360 Hb_000392_430 Hb_000392_430 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_004324_130--Hb_000181_400 Hb_004324_130--Hb_000111_290 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_006831_140 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030 Hb_000708_030 Hb_000708_030 Hb_006831_140--Hb_000708_030 Hb_000078_120 Hb_000078_120 Hb_006831_140--Hb_000078_120 Hb_093458_040 Hb_093458_040 Hb_006831_140--Hb_093458_040 Hb_001021_150 Hb_001021_150 Hb_006831_140--Hb_001021_150 Hb_002078_350 Hb_002078_350 Hb_006831_140--Hb_002078_350 Hb_002456_010--Hb_000111_290 Hb_002456_010--Hb_000614_240 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2801 42.9327 39.8124 46.7708 36.1893 43.1769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6085 45.7904 41.4339 65.5966 44.8015

CAGE analysis