Hb_002232_360

Information

Type -
Description -
Location Contig2232: 283114-288206
Sequence    

Annotation

kegg
ID rcu:RCOM_1381370
description proline iminopeptidase, putative (EC:3.4.11.5)
nr
ID XP_012074537.1
description PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
swissprot
ID P93732
description Proline iminopeptidase OS=Arabidopsis thaliana GN=PIP PE=2 SV=3
trembl
ID B9S7S3
description Proline iminopeptidase OS=Ricinus communis GN=RCOM_1381370 PE=3 SV=1
Gene Ontology
ID GO:0005829
description proline iminopeptidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23129: 282385-288180 , PASA_asmbl_23130: 282367-288274
cDNA
(Sanger)
(ID:Location)		 014_L01.ab1: 286145-288271 , 015_D01.ab1: 287726-288227 , 052_I15.ab1: 285385-288274

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_360 0.0 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
2 Hb_001671_100 0.0595598423 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
3 Hb_000363_190 0.0696969276 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
4 Hb_001999_310 0.0710802731 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
5 Hb_029243_030 0.073758743 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
6 Hb_000392_430 0.0764551376 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
7 Hb_001828_180 0.0774539073 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
8 Hb_001876_050 0.0781301432 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
9 Hb_127743_010 0.0790115181 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
10 Hb_002271_010 0.0793315573 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
11 Hb_003228_110 0.0794074842 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
12 Hb_000406_200 0.0812469235 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
13 Hb_002534_120 0.0820307905 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
14 Hb_007416_120 0.0831508274 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
15 Hb_005663_110 0.0832093399 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
16 Hb_023001_040 0.0839948167 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
17 Hb_003776_060 0.0853208957 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
18 Hb_000663_060 0.0864812948 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
19 Hb_003913_070 0.0879839028 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
20 Hb_010921_050 0.0881242372 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_360 Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002232_360--Hb_001671_100 Hb_000363_190 Hb_000363_190 Hb_002232_360--Hb_000363_190 Hb_001999_310 Hb_001999_310 Hb_002232_360--Hb_001999_310 Hb_029243_030 Hb_029243_030 Hb_002232_360--Hb_029243_030 Hb_000392_430 Hb_000392_430 Hb_002232_360--Hb_000392_430 Hb_001828_180 Hb_001828_180 Hb_002232_360--Hb_001828_180 Hb_007416_120 Hb_007416_120 Hb_001671_100--Hb_007416_120 Hb_001876_050 Hb_001876_050 Hb_001671_100--Hb_001876_050 Hb_001671_100--Hb_001999_310 Hb_001671_100--Hb_000392_430 Hb_001314_050 Hb_001314_050 Hb_001671_100--Hb_001314_050 Hb_000363_190--Hb_001828_180 Hb_000663_060 Hb_000663_060 Hb_000363_190--Hb_000663_060 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002301_100 Hb_002301_100 Hb_000363_190--Hb_002301_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_001999_310--Hb_029243_030 Hb_000574_450 Hb_000574_450 Hb_029243_030--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_029243_030--Hb_010515_020 Hb_029243_030--Hb_001500_140 Hb_029243_030--Hb_027073_020 Hb_002989_020 Hb_002989_020 Hb_029243_030--Hb_002989_020 Hb_000111_320 Hb_000111_320 Hb_000392_430--Hb_000111_320 Hb_000392_430--Hb_001314_050 Hb_002811_180 Hb_002811_180 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000466_140 Hb_000466_140 Hb_000392_430--Hb_000466_140 Hb_001828_180--Hb_000663_060 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8754 40.6495 40.9962 55.9493 38.6552 43.1167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1348 59.0799 36.3179 82.1564 47.6594

CAGE analysis