Hb_027073_020

Information

Type -
Description -
Location Contig27073: 10640-39034
Sequence    

Annotation

kegg
ID rcu:RCOM_0437780
description hypothetical protein
nr
ID XP_012074328.1
description PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
swissprot
ID Q3URQ0
description Testis-expressed sequence 10 protein OS=Mus musculus GN=Tex10 PE=1 SV=1
trembl
ID A0A067KV24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08764 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28383: 15399-16144 , PASA_asmbl_28386: 28417-28688 , PASA_asmbl_28387: 10576-27160 , PASA_asmbl_28388: 10870-27491 , PASA_asmbl_28389: 13320-31960 , PASA_asmbl_28390: 16563-37229 , PASA_asmbl_28391: 19772-20576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027073_020 0.0 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
2 Hb_001789_110 0.0521859531 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_001999_310 0.0531590189 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
4 Hb_000789_200 0.0603336207 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
5 Hb_029243_030 0.0613725193 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
6 Hb_122968_010 0.0643865918 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
7 Hb_000406_200 0.0660791277 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
8 Hb_003943_110 0.0671190077 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
9 Hb_001671_100 0.0696308693 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
10 Hb_003883_060 0.0701850633 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
11 Hb_008033_040 0.0707222745 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
12 Hb_003117_030 0.0718500362 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
13 Hb_000352_310 0.0722508397 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
14 Hb_013726_090 0.0746739962 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
15 Hb_008948_020 0.0747123073 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
16 Hb_003517_040 0.0753699453 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
17 Hb_005976_080 0.0758922005 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
18 Hb_001301_150 0.0763495112 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
19 Hb_005582_040 0.0773945717 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
20 Hb_001417_030 0.0774229182 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]

Gene co-expression network

sample Hb_027073_020 Hb_027073_020 Hb_001789_110 Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_000789_200 Hb_000789_200 Hb_027073_020--Hb_000789_200 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_001789_110--Hb_122968_010 Hb_188281_040 Hb_188281_040 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_000614_240 Hb_000614_240 Hb_001999_310--Hb_000614_240 Hb_001876_050 Hb_001876_050 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_001999_310--Hb_029243_030 Hb_002768_060 Hb_002768_060 Hb_000789_200--Hb_002768_060 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_004480_100 Hb_004480_100 Hb_000789_200--Hb_004480_100 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_000789_200--Hb_001789_110 Hb_000574_450 Hb_000574_450 Hb_029243_030--Hb_000574_450 Hb_010515_020 Hb_010515_020 Hb_029243_030--Hb_010515_020 Hb_029243_030--Hb_001500_140 Hb_002989_020 Hb_002989_020 Hb_029243_030--Hb_002989_020 Hb_000656_070 Hb_000656_070 Hb_122968_010--Hb_000656_070 Hb_003117_030 Hb_003117_030 Hb_122968_010--Hb_003117_030 Hb_122968_010--Hb_000406_200 Hb_002897_090 Hb_002897_090 Hb_122968_010--Hb_002897_090 Hb_000138_100 Hb_000138_100 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83873 2.05071 2.05012 2.7596 1.59551 2.18898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02246 2.73456 2.03773 3.52163 3.85543

CAGE analysis