Hb_002768_060

Information

Type -
Description -
Location Contig2768: 45270-49992
Sequence    

Annotation

kegg
ID vvi:100264061
description probable beta-1,3-galactosyltransferase 2
nr
ID XP_012070841.1
description PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
swissprot
ID A8MRC7
description Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1
trembl
ID A0A067KSM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00899 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable beta- -galactosyltransferase 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28935: 31208-49649 , PASA_asmbl_28936: 49663-49897
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002768_060 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
2 Hb_001876_010 0.0637067632 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
3 Hb_004480_100 0.0659099658 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
4 Hb_003544_160 0.0659297902 - - -
5 Hb_000789_200 0.066243322 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
6 Hb_002908_050 0.075739368 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
7 Hb_004679_030 0.0782511442 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
8 Hb_000358_050 0.0783418164 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
9 Hb_000270_390 0.0799620391 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
10 Hb_000028_390 0.0815042315 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
11 Hb_000720_050 0.0834042533 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
12 Hb_000409_030 0.0839976289 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
13 Hb_007023_030 0.0840632258 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20710, mitochondrial-like [Jatropha curcas]
14 Hb_001865_070 0.0853212695 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
15 Hb_000189_550 0.0860302025 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
16 Hb_000984_170 0.0860376304 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
17 Hb_004143_160 0.0866436784 - - SAB, putative [Ricinus communis]
18 Hb_000504_180 0.0868079437 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
19 Hb_000656_010 0.0877561519 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
20 Hb_000922_030 0.0896583887 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002768_060 Hb_002768_060 Hb_001876_010 Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_004480_100 Hb_004480_100 Hb_002768_060--Hb_004480_100 Hb_003544_160 Hb_003544_160 Hb_002768_060--Hb_003544_160 Hb_000789_200 Hb_000789_200 Hb_002768_060--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_000011_060 Hb_000011_060 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_002908_050 Hb_000189_550 Hb_000189_550 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_000028_390 Hb_000028_390 Hb_001876_010--Hb_000028_390 Hb_000984_170 Hb_000984_170 Hb_001876_010--Hb_000984_170 Hb_004480_100--Hb_000789_200 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220 Hb_002414_050 Hb_002414_050 Hb_003544_160--Hb_002414_050 Hb_003544_160--Hb_004679_030 Hb_001662_100 Hb_001662_100 Hb_003544_160--Hb_001662_100 Hb_003544_160--Hb_001876_010 Hb_000359_210 Hb_000359_210 Hb_003544_160--Hb_000359_210 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_002908_050--Hb_000189_550 Hb_002908_050--Hb_000984_170 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_000809_230 Hb_000809_230 Hb_004679_030--Hb_000809_230 Hb_009296_040 Hb_009296_040 Hb_004679_030--Hb_009296_040 Hb_001377_350 Hb_001377_350 Hb_004679_030--Hb_001377_350 Hb_005582_040 Hb_005582_040 Hb_004679_030--Hb_005582_040 Hb_011228_010 Hb_011228_010 Hb_004679_030--Hb_011228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86157 6.3705 3.6146 8.47558 4.78041 6.47144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.42543 4.23731 7.35794 9.19689 13.6069

CAGE analysis