Hb_001951_220

Information

Type -
Description -
Location Contig1951: 188975-195143
Sequence    

Annotation

kegg
ID rcu:RCOM_0634540
description hypothetical protein
nr
ID XP_012091895.1
description PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
swissprot
ID Q05D32
description CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2 PE=1 SV=2
trembl
ID A0A067JNY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21670 PE=4 SV=1
Gene Ontology
ID GO:0005515
description nli interacting factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19509: 189021-195108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_220 0.0 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
2 Hb_000504_180 0.0723171033 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
3 Hb_004480_100 0.0781834336 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
4 Hb_000917_230 0.0794018602 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
5 Hb_002686_090 0.0806822416 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
6 Hb_001716_040 0.0843268147 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
7 Hb_000186_050 0.0845183454 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
8 Hb_005582_040 0.0871328136 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
9 Hb_004435_030 0.0872951644 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
10 Hb_000789_200 0.0883005561 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
11 Hb_000640_040 0.0898354241 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
12 Hb_001818_100 0.0907334179 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_002768_060 0.0916280038 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
14 Hb_005736_020 0.0921118505 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
15 Hb_001789_150 0.0928241278 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
16 Hb_000204_120 0.0939084426 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
17 Hb_001304_110 0.0959199121 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
18 Hb_000327_180 0.0962653859 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
19 Hb_000497_300 0.0965923141 - - peroxisomal membrane protein [Hevea brasiliensis]
20 Hb_000482_040 0.0980934657 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001951_220 Hb_001951_220 Hb_000504_180 Hb_000504_180 Hb_001951_220--Hb_000504_180 Hb_004480_100 Hb_004480_100 Hb_001951_220--Hb_004480_100 Hb_000917_230 Hb_000917_230 Hb_001951_220--Hb_000917_230 Hb_002686_090 Hb_002686_090 Hb_001951_220--Hb_002686_090 Hb_001716_040 Hb_001716_040 Hb_001951_220--Hb_001716_040 Hb_000186_050 Hb_000186_050 Hb_001951_220--Hb_000186_050 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_002768_060 Hb_002768_060 Hb_004480_100--Hb_002768_060 Hb_000789_200 Hb_000789_200 Hb_004480_100--Hb_000789_200 Hb_002908_050 Hb_002908_050 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_001876_010 Hb_001876_010 Hb_004480_100--Hb_001876_010 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000078_120 Hb_000078_120 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_001865_070 Hb_001865_070 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_000170_130 Hb_000170_130 Hb_002686_090--Hb_000170_130 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_003943_110 Hb_003943_110 Hb_001716_040--Hb_003943_110 Hb_000665_130 Hb_000665_130 Hb_000186_050--Hb_000665_130 Hb_001999_210 Hb_001999_210 Hb_000186_050--Hb_001999_210 Hb_000186_050--Hb_000504_180 Hb_000186_050--Hb_002768_060 Hb_000465_280 Hb_000465_280 Hb_000186_050--Hb_000465_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.58283 8.42473 4.42031 8.69012 3.03976 6.76366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.39948 7.76543 8.59164 8.15321 14.4196

CAGE analysis