Hb_000465_280

Information

Type -
Description -
Location Contig465: 254599-255969
Sequence    

Annotation

kegg
ID rcu:RCOM_0006380
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012070043.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
swissprot
ID Q9LVS3
description Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1
trembl
ID A0A067KUM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03442 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43986: 254453-255216 , PASA_asmbl_43988: 255723-256522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_280 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
2 Hb_012506_040 0.0569067962 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
3 Hb_006775_130 0.0706262764 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
4 Hb_007763_070 0.0747265622 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
5 Hb_000504_180 0.076638395 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_009296_080 0.0767036978 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
7 Hb_002686_090 0.0826529871 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
8 Hb_009658_030 0.082684084 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
9 Hb_000193_330 0.08423588 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
10 Hb_001712_060 0.0864502897 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
11 Hb_004374_110 0.0867373445 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
12 Hb_138585_080 0.0889203594 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
13 Hb_000170_130 0.0911846423 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
14 Hb_000186_050 0.0915459765 - - PREDICTED: uncharacterized protein LOC105649281 [Jatropha curcas]
15 Hb_001865_070 0.0923780041 - - PREDICTED: uncharacterized protein LOC105647937 isoform X1 [Jatropha curcas]
16 Hb_005977_070 0.0929452609 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_000538_280 0.0929562331 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
18 Hb_009288_020 0.0947025224 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
19 Hb_004679_030 0.0957009314 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
20 Hb_034585_010 0.0963259966 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]

Gene co-expression network

sample Hb_000465_280 Hb_000465_280 Hb_012506_040 Hb_012506_040 Hb_000465_280--Hb_012506_040 Hb_006775_130 Hb_006775_130 Hb_000465_280--Hb_006775_130 Hb_007763_070 Hb_007763_070 Hb_000465_280--Hb_007763_070 Hb_000504_180 Hb_000504_180 Hb_000465_280--Hb_000504_180 Hb_009296_080 Hb_009296_080 Hb_000465_280--Hb_009296_080 Hb_002686_090 Hb_002686_090 Hb_000465_280--Hb_002686_090 Hb_000170_130 Hb_000170_130 Hb_012506_040--Hb_000170_130 Hb_012506_040--Hb_002686_090 Hb_001865_070 Hb_001865_070 Hb_012506_040--Hb_001865_070 Hb_004374_110 Hb_004374_110 Hb_012506_040--Hb_004374_110 Hb_005701_130 Hb_005701_130 Hb_012506_040--Hb_005701_130 Hb_001712_060 Hb_001712_060 Hb_006775_130--Hb_001712_060 Hb_006775_130--Hb_007763_070 Hb_005736_020 Hb_005736_020 Hb_006775_130--Hb_005736_020 Hb_000482_190 Hb_000482_190 Hb_006775_130--Hb_000482_190 Hb_006775_130--Hb_000504_180 Hb_007763_070--Hb_001712_060 Hb_000193_330 Hb_000193_330 Hb_007763_070--Hb_000193_330 Hb_001789_110 Hb_001789_110 Hb_007763_070--Hb_001789_110 Hb_000538_280 Hb_000538_280 Hb_007763_070--Hb_000538_280 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_138585_080 Hb_138585_080 Hb_009296_080--Hb_138585_080 Hb_004137_020 Hb_004137_020 Hb_009296_080--Hb_004137_020 Hb_012114_100 Hb_012114_100 Hb_009296_080--Hb_012114_100 Hb_000803_320 Hb_000803_320 Hb_009296_080--Hb_000803_320 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_002686_090--Hb_001865_070 Hb_000204_120 Hb_000204_120 Hb_002686_090--Hb_000204_120 Hb_002686_090--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_002686_090--Hb_002542_110 Hb_002686_090--Hb_000170_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79513 6.72733 3.23355 7.21945 2.89939 4.29992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25811 3.57199 5.71677 4.05414 10.8521

CAGE analysis