Hb_005701_130

Information

Type transcription factor
Description TF Family: SWI/SNF-SWI3
Location Contig5701: 104733-114373
Sequence    

Annotation

kegg
ID rcu:RCOM_1596610
description lysine-specific histone demethylase, putative (EC:1.4.3.2)
nr
ID XP_012071981.1
description PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
swissprot
ID F4JLS1
description Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis thaliana GN=LDL3 PE=2 SV=1
trembl
ID A0A067L282
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04520 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lysine-specific histone demethylase 1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49341: 104570-110583 , PASA_asmbl_49342: 110683-112758 , PASA_asmbl_49344: 113272-113791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_130 0.0 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
2 Hb_012053_090 0.0652505178 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
3 Hb_005488_170 0.0690939824 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
4 Hb_000538_280 0.0761508424 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
5 Hb_001377_100 0.0761538618 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_001648_020 0.0795019588 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
7 Hb_002600_060 0.0825154085 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
8 Hb_000059_230 0.0829060208 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
9 Hb_007545_130 0.0850059833 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
10 Hb_012506_040 0.0863930722 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
11 Hb_000925_090 0.0864279941 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
12 Hb_006816_370 0.0867232681 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
13 Hb_005186_040 0.0872615209 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_000958_050 0.0873604944 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
15 Hb_000445_090 0.087768625 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
16 Hb_012244_020 0.0886642624 - - calpain, putative [Ricinus communis]
17 Hb_000170_130 0.0886797684 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
18 Hb_013459_010 0.0890959331 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
19 Hb_000186_080 0.0892220054 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
20 Hb_003607_070 0.0898433758 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]

Gene co-expression network

sample Hb_005701_130 Hb_005701_130 Hb_012053_090 Hb_012053_090 Hb_005701_130--Hb_012053_090 Hb_005488_170 Hb_005488_170 Hb_005701_130--Hb_005488_170 Hb_000538_280 Hb_000538_280 Hb_005701_130--Hb_000538_280 Hb_001377_100 Hb_001377_100 Hb_005701_130--Hb_001377_100 Hb_001648_020 Hb_001648_020 Hb_005701_130--Hb_001648_020 Hb_002600_060 Hb_002600_060 Hb_005701_130--Hb_002600_060 Hb_002328_040 Hb_002328_040 Hb_012053_090--Hb_002328_040 Hb_012053_090--Hb_005488_170 Hb_012053_090--Hb_002600_060 Hb_003607_070 Hb_003607_070 Hb_012053_090--Hb_003607_070 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_005488_170--Hb_002600_060 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000193_330 Hb_000193_330 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_001005_130 Hb_001005_130 Hb_000538_280--Hb_001005_130 Hb_000538_280--Hb_000059_230 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_001377_100--Hb_000059_230 Hb_001648_020--Hb_005186_040 Hb_001648_020--Hb_012244_020 Hb_005408_030 Hb_005408_030 Hb_001648_020--Hb_005408_030 Hb_011174_020 Hb_011174_020 Hb_001648_020--Hb_011174_020 Hb_000934_210 Hb_000934_210 Hb_001648_020--Hb_000934_210 Hb_001563_010 Hb_001563_010 Hb_001648_020--Hb_001563_010 Hb_000331_560 Hb_000331_560 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99034 6.85936 3.90134 3.71018 3.26544 3.91857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06864 2.19031 4.29406 4.23339 10.8196

CAGE analysis