Hb_002328_040

Information

Type -
Description -
Location Contig2328: 31404-33698
Sequence    

Annotation

kegg
ID tcc:TCM_021983
description Pentatricopeptide repeat (PPR) superfamily protein
nr
ID XP_012074894.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
swissprot
ID Q9LFF1
description Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
trembl
ID A0A067KH88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09039 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24478: 31621-33990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002328_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Jatropha curcas]
2 Hb_012053_090 0.0682459336 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
3 Hb_002233_130 0.081917604 - - transporter, putative [Ricinus communis]
4 Hb_002600_060 0.0820581084 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
5 Hb_026053_040 0.0830146673 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000033_110 0.087302981 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
7 Hb_000331_560 0.0893360866 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
8 Hb_005701_130 0.0938798082 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
9 Hb_003607_070 0.09665521 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
10 Hb_000260_560 0.0976024161 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18110, chloroplastic [Jatropha curcas]
11 Hb_000684_350 0.0980972397 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
12 Hb_007545_130 0.1001144543 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
13 Hb_000445_090 0.1005865849 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
14 Hb_000320_470 0.1018888115 - - calcium-dependent protein kinase [Hevea brasiliensis]
15 Hb_001563_010 0.1021167979 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
16 Hb_000958_050 0.1026370354 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
17 Hb_005488_170 0.1032082771 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
18 Hb_003506_050 0.1035631413 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_005211_020 0.1038643452 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
20 Hb_041327_020 0.1048212356 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002328_040 Hb_002328_040 Hb_012053_090 Hb_012053_090 Hb_002328_040--Hb_012053_090 Hb_002233_130 Hb_002233_130 Hb_002328_040--Hb_002233_130 Hb_002600_060 Hb_002600_060 Hb_002328_040--Hb_002600_060 Hb_026053_040 Hb_026053_040 Hb_002328_040--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_002328_040--Hb_000033_110 Hb_000331_560 Hb_000331_560 Hb_002328_040--Hb_000331_560 Hb_005701_130 Hb_005701_130 Hb_012053_090--Hb_005701_130 Hb_005488_170 Hb_005488_170 Hb_012053_090--Hb_005488_170 Hb_012053_090--Hb_002600_060 Hb_003607_070 Hb_003607_070 Hb_012053_090--Hb_003607_070 Hb_000059_230 Hb_000059_230 Hb_012053_090--Hb_000059_230 Hb_001244_150 Hb_001244_150 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_004324_330 Hb_004324_330 Hb_002233_130--Hb_004324_330 Hb_007305_020 Hb_007305_020 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002600_060--Hb_000331_560 Hb_000925_090 Hb_000925_090 Hb_002600_060--Hb_000925_090 Hb_005211_020 Hb_005211_020 Hb_002600_060--Hb_005211_020 Hb_001133_030 Hb_001133_030 Hb_002600_060--Hb_001133_030 Hb_002600_060--Hb_005488_170 Hb_000083_070 Hb_000083_070 Hb_002600_060--Hb_000083_070 Hb_000320_470 Hb_000320_470 Hb_026053_040--Hb_000320_470 Hb_017469_110 Hb_017469_110 Hb_026053_040--Hb_017469_110 Hb_000181_100 Hb_000181_100 Hb_026053_040--Hb_000181_100 Hb_001008_070 Hb_001008_070 Hb_026053_040--Hb_001008_070 Hb_026053_040--Hb_000033_110 Hb_013405_080 Hb_013405_080 Hb_026053_040--Hb_013405_080 Hb_000033_110--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_003203_030 Hb_003203_030 Hb_000331_560--Hb_003203_030 Hb_018118_010 Hb_018118_010 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_000331_560--Hb_009252_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.13191 7.53046 6.99944 4.47298 6.96418 5.23842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21102 2.64019 5.08187 4.13582 13.5968

CAGE analysis