Hb_003203_030

Information

Type -
Description -
Location Contig3203: 10592-13156
Sequence    

Annotation

kegg
ID vvi:100260559
description pentatricopeptide repeat-containing protein At2g13600-like
nr
ID XP_012084537.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
swissprot
ID Q9LFL5
description Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
trembl
ID A0A067JXD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20129 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g13600-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33849: 12019-12344
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003203_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
2 Hb_000331_560 0.0624285146 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
3 Hb_018118_010 0.0706830266 - - DNA polymerase I, putative [Ricinus communis]
4 Hb_005348_010 0.0710965447 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006816_430 0.0735681084 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
6 Hb_001862_180 0.0768732064 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
7 Hb_001259_020 0.0780912158 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
8 Hb_001498_010 0.0783142117 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
9 Hb_000265_230 0.0785514812 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
10 Hb_019430_020 0.0807393748 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
11 Hb_000329_750 0.0830356868 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
12 Hb_000906_100 0.084201402 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
13 Hb_006295_020 0.0862943555 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
14 Hb_002600_060 0.086404352 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
15 Hb_000041_090 0.0865283654 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
16 Hb_001205_230 0.0871758356 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
17 Hb_009767_080 0.087709685 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
18 Hb_000803_260 0.0894964408 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
19 Hb_000672_040 0.0901422254 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
20 Hb_000046_190 0.0905076159 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]

Gene co-expression network

sample Hb_003203_030 Hb_003203_030 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_005488_170 Hb_005488_170 Hb_005348_010--Hb_005488_170 Hb_002909_120 Hb_002909_120 Hb_005348_010--Hb_002909_120 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_001205_230 Hb_001205_230 Hb_001862_180--Hb_001205_230 Hb_003910_060 Hb_003910_060 Hb_001862_180--Hb_003910_060 Hb_000803_260 Hb_000803_260 Hb_001862_180--Hb_000803_260 Hb_000388_090 Hb_000388_090 Hb_001862_180--Hb_000388_090 Hb_001329_140 Hb_001329_140 Hb_001862_180--Hb_001329_140 Hb_000661_030 Hb_000661_030 Hb_001259_020--Hb_000661_030 Hb_000816_100 Hb_000816_100 Hb_001259_020--Hb_000816_100 Hb_001259_020--Hb_000331_560 Hb_000627_250 Hb_000627_250 Hb_001259_020--Hb_000627_250 Hb_001498_010 Hb_001498_010 Hb_001259_020--Hb_001498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.533304 0.654205 0.337806 0.299776 0.453696 0.579778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.292118 0.256909 0.43844 0.365054 0.891499

CAGE analysis