Hb_000679_020

Information

Type transcription factor
Description TF Family: HB
Location Contig679: 32155-36959
Sequence    

Annotation

kegg
ID rcu:RCOM_0924560
description hypothetical protein
nr
ID XP_012076603.1
description PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
swissprot
ID Q8H0V5
description Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3 OS=Arabidopsis thaliana GN=OCP3 PE=1 SV=1
trembl
ID A0A067KMV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07186 PE=4 SV=1
Gene Ontology
ID GO:0001101
description overexpressor of cationic peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53667: 32187-35480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_020 0.0 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
2 Hb_000864_030 0.0498441104 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
3 Hb_000661_030 0.0671613718 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
4 Hb_000174_170 0.072429687 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
5 Hb_000563_420 0.0762219756 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
6 Hb_004920_090 0.0762982171 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000906_100 0.0785744763 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
8 Hb_003038_200 0.0807990606 desease resistance Gene Name: MMR_HSR1 PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
9 Hb_018118_010 0.0816452408 - - DNA polymerase I, putative [Ricinus communis]
10 Hb_004800_180 0.0819346598 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
11 Hb_000544_010 0.0856179534 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
12 Hb_000027_190 0.0870214341 - - PREDICTED: uncharacterized protein LOC105642057 isoform X1 [Jatropha curcas]
13 Hb_000834_200 0.087206887 - - PREDICTED: splicing factor, arginine/serine-rich 19 [Jatropha curcas]
14 Hb_008387_020 0.0877940729 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
15 Hb_007426_110 0.0878201608 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
16 Hb_000181_240 0.0883049009 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
17 Hb_003020_030 0.0885073539 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
18 Hb_000033_110 0.0885701639 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
19 Hb_004310_140 0.0886841212 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
20 Hb_000076_130 0.0893679175 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_020 Hb_000679_020 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000174_170 Hb_000174_170 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_000864_030--Hb_000174_170 Hb_004800_180 Hb_004800_180 Hb_000864_030--Hb_004800_180 Hb_008059_010 Hb_008059_010 Hb_000864_030--Hb_008059_010 Hb_000864_030--Hb_000563_420 Hb_000115_280 Hb_000115_280 Hb_000864_030--Hb_000115_280 Hb_001259_020 Hb_001259_020 Hb_000661_030--Hb_001259_020 Hb_000027_190 Hb_000027_190 Hb_000661_030--Hb_000027_190 Hb_188126_010 Hb_188126_010 Hb_000661_030--Hb_188126_010 Hb_000815_170 Hb_000815_170 Hb_000661_030--Hb_000815_170 Hb_000661_030--Hb_000906_100 Hb_000165_040 Hb_000165_040 Hb_000174_170--Hb_000165_040 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_000174_170--Hb_008059_010 Hb_000563_420--Hb_004800_180 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_008024_030 Hb_008024_030 Hb_004920_090--Hb_008024_030 Hb_001623_480 Hb_001623_480 Hb_004920_090--Hb_001623_480 Hb_004920_090--Hb_000563_420 Hb_000035_170 Hb_000035_170 Hb_004920_090--Hb_000035_170 Hb_000544_010 Hb_000544_010 Hb_004920_090--Hb_000544_010 Hb_000834_200 Hb_000834_200 Hb_000906_100--Hb_000834_200 Hb_001999_290 Hb_001999_290 Hb_000906_100--Hb_001999_290 Hb_001498_010 Hb_001498_010 Hb_000906_100--Hb_001498_010 Hb_000473_110 Hb_000473_110 Hb_000906_100--Hb_000473_110 Hb_003203_030 Hb_003203_030 Hb_000906_100--Hb_003203_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84933 5.47283 7.07577 4.05715 9.20206 7.2744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.68771 3.78422 4.79741 6.93335 12.2315

CAGE analysis