Hb_000300_120

Information

Type -
Description -
Location Contig300: 91303-95578
Sequence    

Annotation

kegg
ID rcu:RCOM_0844850
description hypothetical protein
nr
ID XP_012070361.1
description PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
swissprot
ID Q8S9K3
description Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana GN=VAR3 PE=1 SV=2
trembl
ID A0A067KU03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02652 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31553: 91359-95390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_120 0.0 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
2 Hb_000331_560 0.0810828029 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
3 Hb_018118_010 0.0844644307 - - DNA polymerase I, putative [Ricinus communis]
4 Hb_000041_090 0.0864493202 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
5 Hb_006295_020 0.0908174288 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
6 Hb_003203_030 0.0952683344 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
7 Hb_000816_100 0.0994368963 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_003884_030 0.1001993576 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
9 Hb_001259_020 0.1009304623 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
10 Hb_001089_060 0.1052154415 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
11 Hb_005470_020 0.1055131622 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
12 Hb_003506_050 0.1068156899 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_009252_040 0.108485332 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
14 Hb_017966_020 0.109170947 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
15 Hb_023278_010 0.11404731 - - Chaperone protein DnaJ [Glycine soja]
16 Hb_000265_230 0.1146997917 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
17 Hb_000815_170 0.1152261322 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
18 Hb_006816_430 0.1159700481 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
19 Hb_003388_030 0.1163119849 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
20 Hb_005250_030 0.1165169959 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_120 Hb_000300_120 Hb_000331_560 Hb_000331_560 Hb_000300_120--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_000300_120--Hb_018118_010 Hb_000041_090 Hb_000041_090 Hb_000300_120--Hb_000041_090 Hb_006295_020 Hb_006295_020 Hb_000300_120--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_000300_120--Hb_003203_030 Hb_000816_100 Hb_000816_100 Hb_000300_120--Hb_000816_100 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_000331_560--Hb_003203_030 Hb_000331_560--Hb_018118_010 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_009252_040 Hb_009252_040 Hb_000331_560--Hb_009252_040 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_018118_010--Hb_003203_030 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_000041_090--Hb_006295_020 Hb_002233_100 Hb_002233_100 Hb_000041_090--Hb_002233_100 Hb_006816_430 Hb_006816_430 Hb_000041_090--Hb_006816_430 Hb_000041_090--Hb_003203_030 Hb_003440_050 Hb_003440_050 Hb_000041_090--Hb_003440_050 Hb_005348_010 Hb_005348_010 Hb_006295_020--Hb_005348_010 Hb_000083_070 Hb_000083_070 Hb_006295_020--Hb_000083_070 Hb_000329_750 Hb_000329_750 Hb_006295_020--Hb_000329_750 Hb_006295_020--Hb_000265_230 Hb_006295_020--Hb_003203_030 Hb_003203_030--Hb_005348_010 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_021346_030 Hb_021346_030 Hb_000816_100--Hb_021346_030 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3709 30.7769 16.0964 15.7399 30.7979 51.171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8809 12.2279 18.6011 19.0694 60.8986

CAGE analysis