Hb_003440_050

Information

Type -
Description -
Location Contig3440: 31375-35968
Sequence    

Annotation

kegg
ID rcu:RCOM_1619470
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP20037.1
description hypothetical protein JCGZ_05806 [Jatropha curcas]
swissprot
ID Q0WN60
description Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
trembl
ID A0A067J8K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05806 PE=4 SV=1
Gene Ontology
ID GO:0016556
description pentatricopeptide repeat-containing protein at1g18485

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35927: 33358-33660 , PASA_asmbl_35929: 35322-35725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003440_050 0.0 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
2 Hb_012656_030 0.0785734133 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
3 Hb_000318_390 0.0827965869 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
4 Hb_000174_220 0.0843697142 - - cohesin subunit rad21, putative [Ricinus communis]
5 Hb_000803_260 0.0859968644 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
6 Hb_000041_090 0.0869828449 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
7 Hb_000139_090 0.0875236217 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
8 Hb_001205_230 0.0898889768 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
9 Hb_003938_080 0.0899773507 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
10 Hb_001472_090 0.0906182717 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_007416_160 0.0912112114 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
12 Hb_000574_400 0.0918228756 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
13 Hb_006816_430 0.0939038755 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
14 Hb_027346_010 0.0941064311 - - -
15 Hb_005181_110 0.0963754924 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
16 Hb_014267_010 0.0968220863 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
17 Hb_003216_080 0.0976061855 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
18 Hb_012799_030 0.0979121618 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
19 Hb_000034_040 0.0979368514 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
20 Hb_000291_050 0.0987979327 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003440_050 Hb_003440_050 Hb_012656_030 Hb_012656_030 Hb_003440_050--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_003440_050--Hb_000318_390 Hb_000174_220 Hb_000174_220 Hb_003440_050--Hb_000174_220 Hb_000803_260 Hb_000803_260 Hb_003440_050--Hb_000803_260 Hb_000041_090 Hb_000041_090 Hb_003440_050--Hb_000041_090 Hb_000139_090 Hb_000139_090 Hb_003440_050--Hb_000139_090 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_014267_010 Hb_014267_010 Hb_012656_030--Hb_014267_010 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_000318_390--Hb_014267_010 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_000174_220--Hb_000139_090 Hb_015807_070 Hb_015807_070 Hb_000174_220--Hb_015807_070 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040 Hb_001247_070 Hb_001247_070 Hb_000174_220--Hb_001247_070 Hb_001329_140 Hb_001329_140 Hb_000803_260--Hb_001329_140 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000684_250 Hb_000684_250 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_006295_020 Hb_006295_020 Hb_000041_090--Hb_006295_020 Hb_002233_100 Hb_002233_100 Hb_000041_090--Hb_002233_100 Hb_006816_430 Hb_006816_430 Hb_000041_090--Hb_006816_430 Hb_000300_120 Hb_000300_120 Hb_000041_090--Hb_000300_120 Hb_003203_030 Hb_003203_030 Hb_000041_090--Hb_003203_030 Hb_000139_090--Hb_001247_070 Hb_002524_040 Hb_002524_040 Hb_000139_090--Hb_002524_040 Hb_007576_120 Hb_007576_120 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_000139_090--Hb_015807_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09184 2.12334 0.707935 0.682088 1.66007 2.32115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757155 1.16959 1.71056 1.00637 2.1671

CAGE analysis