Hb_000318_390

Information

Type -
Description -
Location Contig318: 366110-386624
Sequence    

Annotation

kegg
ID rcu:RCOM_0938990
description hypothetical protein
nr
ID XP_012069259.1
description PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
swissprot
ID Q96Q15
description Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1 SV=3
trembl
ID B9RZF8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0938990 PE=4 SV=1
Gene Ontology
ID GO:0005622
description target of rapamycin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33545: 367022-367179 , PASA_asmbl_33550: 376023-376477 , PASA_asmbl_33553: 377505-377851 , PASA_asmbl_33555: 378681-384320 , PASA_asmbl_33557: 384365-384918 , PASA_asmbl_33559: 385160-386937
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_390 0.0 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
2 Hb_014267_010 0.0616896355 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
3 Hb_012656_030 0.0617791299 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
4 Hb_000890_050 0.0748245386 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
5 Hb_000803_260 0.0749200509 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
6 Hb_001205_230 0.077748127 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
7 Hb_003440_050 0.0827965869 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
8 Hb_002784_110 0.0890565893 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
9 Hb_000193_310 0.0891314408 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
10 Hb_004143_130 0.0900558001 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
11 Hb_012799_030 0.0901624283 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
12 Hb_009767_080 0.0907386594 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
13 Hb_000031_170 0.0917343935 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
14 Hb_000035_290 0.09235962 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_000189_110 0.0933752414 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
16 Hb_001439_140 0.0942128404 - - pattern formation protein, putative [Ricinus communis]
17 Hb_001967_030 0.0942297639 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_001199_100 0.0942972502 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
19 Hb_000041_090 0.0943920019 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
20 Hb_001268_350 0.0946097976 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]

Gene co-expression network

sample Hb_000318_390 Hb_000318_390 Hb_014267_010 Hb_014267_010 Hb_000318_390--Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_000318_390--Hb_012656_030 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_000803_260 Hb_000803_260 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_003440_050 Hb_003440_050 Hb_000318_390--Hb_003440_050 Hb_014267_010--Hb_012656_030 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_004228_010 Hb_004228_010 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_012656_030--Hb_003440_050 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_004143_130 Hb_004143_130 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000890_050--Hb_001967_030 Hb_001329_140 Hb_001329_140 Hb_000803_260--Hb_001329_140 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000684_250 Hb_000684_250 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_027346_010 Hb_027346_010 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_001205_230--Hb_000035_290 Hb_000174_220 Hb_000174_220 Hb_003440_050--Hb_000174_220 Hb_003440_050--Hb_000803_260 Hb_000041_090 Hb_000041_090 Hb_003440_050--Hb_000041_090 Hb_000139_090 Hb_000139_090 Hb_003440_050--Hb_000139_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.89579 3.99319 1.12904 1.45997 3.73499 4.32306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71472 2.22552 3.99887 3.14323 4.48984

CAGE analysis