Hb_027346_010

Information

Type -
Description -
Location Contig27346: 13690-18102
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28553: 15264-15876 , PASA_asmbl_28554: 17177-17314
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027346_010 0.0 - - -
2 Hb_001205_230 0.0545915729 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
3 Hb_003470_080 0.0668698363 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
4 Hb_009486_060 0.071991209 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
5 Hb_000281_090 0.0723058041 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
6 Hb_006816_430 0.0759955649 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
7 Hb_000291_050 0.0766442549 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
8 Hb_000574_400 0.0785169668 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
9 Hb_002234_170 0.0799171158 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
10 Hb_005779_080 0.080982232 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
11 Hb_004162_090 0.0827800625 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
12 Hb_001004_060 0.083437513 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
13 Hb_004117_140 0.0841996677 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
14 Hb_005489_020 0.086560923 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000003_190 0.0880518031 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
16 Hb_009150_020 0.0888020489 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
17 Hb_003206_130 0.0889955628 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
18 Hb_000035_290 0.0895022781 - - RNA recognition motif-containing family protein [Populus trichocarpa]
19 Hb_000808_030 0.0900977103 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
20 Hb_001080_230 0.0919755636 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]

Gene co-expression network

sample Hb_027346_010 Hb_027346_010 Hb_001205_230 Hb_001205_230 Hb_027346_010--Hb_001205_230 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_009486_060 Hb_009486_060 Hb_027346_010--Hb_009486_060 Hb_000281_090 Hb_000281_090 Hb_027346_010--Hb_000281_090 Hb_006816_430 Hb_006816_430 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_000003_190 Hb_000003_190 Hb_003470_080--Hb_000003_190 Hb_003206_130 Hb_003206_130 Hb_003470_080--Hb_003206_130 Hb_002253_080 Hb_002253_080 Hb_003470_080--Hb_002253_080 Hb_001080_230 Hb_001080_230 Hb_003470_080--Hb_001080_230 Hb_000069_470 Hb_000069_470 Hb_003470_080--Hb_000069_470 Hb_000170_150 Hb_000170_150 Hb_003470_080--Hb_000170_150 Hb_008221_180 Hb_008221_180 Hb_009486_060--Hb_008221_180 Hb_000574_400 Hb_000574_400 Hb_009486_060--Hb_000574_400 Hb_002234_170 Hb_002234_170 Hb_009486_060--Hb_002234_170 Hb_001671_010 Hb_001671_010 Hb_009486_060--Hb_001671_010 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_001008_120 Hb_001008_120 Hb_000281_090--Hb_001008_120 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_003203_030 Hb_003203_030 Hb_006816_430--Hb_003203_030 Hb_000265_230 Hb_000265_230 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_002725_120 Hb_002725_120 Hb_000291_050--Hb_002725_120 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000165_250 Hb_000165_250 Hb_000291_050--Hb_000165_250 Hb_006649_050 Hb_006649_050 Hb_000291_050--Hb_006649_050 Hb_005496_130 Hb_005496_130 Hb_000291_050--Hb_005496_130 Hb_000291_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.91327 11.5036 3.87057 4.53804 8.47221 7.63714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71261 7.82005 7.01833 5.49698 10.8937

CAGE analysis