Hb_004162_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig4162: 83302-88564
Sequence    

Annotation

kegg
ID rcu:RCOM_1454070
description DNA binding protein, putative
nr
ID XP_012068581.1
description PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067KZR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24477 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41169: 82323-88476
cDNA
(Sanger)
(ID:Location)		 045_F19.ab1: 82328-83491

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_090 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
2 Hb_001638_270 0.0745626631 - - PREDICTED: vacuolar protein sorting-associated protein 8 homolog isoform X2 [Jatropha curcas]
3 Hb_000035_290 0.080494411 - - RNA recognition motif-containing family protein [Populus trichocarpa]
4 Hb_001205_230 0.0815118251 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
5 Hb_027346_010 0.0827800625 - - -
6 Hb_005699_090 0.0837459621 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
7 Hb_025194_040 0.087924941 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
8 Hb_009503_030 0.0895591904 - - protein dimerization, putative [Ricinus communis]
9 Hb_000281_090 0.0903926427 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
10 Hb_000190_120 0.0908955515 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
11 Hb_011457_070 0.0912950342 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
12 Hb_000003_190 0.0938058347 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
13 Hb_009545_100 0.0946504748 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
14 Hb_144831_010 0.095090952 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
15 Hb_000343_120 0.0958661961 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
16 Hb_001268_350 0.0967439922 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
17 Hb_002784_110 0.0967561875 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
18 Hb_009175_020 0.0980075466 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
19 Hb_000429_220 0.0983052743 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
20 Hb_000538_160 0.09956207 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_090 Hb_004162_090 Hb_001638_270 Hb_001638_270 Hb_004162_090--Hb_001638_270 Hb_000035_290 Hb_000035_290 Hb_004162_090--Hb_000035_290 Hb_001205_230 Hb_001205_230 Hb_004162_090--Hb_001205_230 Hb_027346_010 Hb_027346_010 Hb_004162_090--Hb_027346_010 Hb_005699_090 Hb_005699_090 Hb_004162_090--Hb_005699_090 Hb_025194_040 Hb_025194_040 Hb_004162_090--Hb_025194_040 Hb_167498_010 Hb_167498_010 Hb_001638_270--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_001638_270--Hb_003158_010 Hb_000395_130 Hb_000395_130 Hb_001638_270--Hb_000395_130 Hb_000003_190 Hb_000003_190 Hb_001638_270--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001638_270--Hb_000092_020 Hb_000574_540 Hb_000574_540 Hb_001638_270--Hb_000574_540 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_009486_060 Hb_009486_060 Hb_001205_230--Hb_009486_060 Hb_001205_230--Hb_000035_290 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_027346_010--Hb_009486_060 Hb_027346_010--Hb_000281_090 Hb_006816_430 Hb_006816_430 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_005699_090--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_005699_090--Hb_001268_350 Hb_000563_640 Hb_000563_640 Hb_005699_090--Hb_000563_640 Hb_005699_090--Hb_002784_110 Hb_003544_180 Hb_003544_180 Hb_005699_090--Hb_003544_180 Hb_005699_090--Hb_025194_040 Hb_025194_040--Hb_002784_110 Hb_025194_040--Hb_000343_120 Hb_025194_040--Hb_000166_130 Hb_000540_060 Hb_000540_060 Hb_025194_040--Hb_000540_060 Hb_009476_040 Hb_009476_040 Hb_025194_040--Hb_009476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1327 12.6966 3.5058 6.29662 15.3767 10.7618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.43911 8.92141 7.32889 9.17197 12.9779

CAGE analysis