Hb_005496_110

Information

Type -
Description -
Location Contig5496: 86851-101372
Sequence    

Annotation

kegg
ID vvi:100259158
description uncharacterized LOC100259158
nr
ID XP_010999867.1
description PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KZJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16038 PE=4 SV=1
Gene Ontology
ID GO:0000166
description ubiquitin system component cue domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48217: 87079-88201 , PASA_asmbl_48218: 88297-88548 , PASA_asmbl_48219: 88558-92463 , PASA_asmbl_48221: 93524-98477 , PASA_asmbl_48222: 99124-101387 , PASA_asmbl_48223: 99124-101387 , PASA_asmbl_48224: 99925-100183
cDNA
(Sanger)
(ID:Location)		 028_F02.ab1: 101041-101387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_110 0.0 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
2 Hb_000035_290 0.0606736008 - - RNA recognition motif-containing family protein [Populus trichocarpa]
3 Hb_000788_070 0.0687864947 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
4 Hb_004108_100 0.0690044249 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
5 Hb_001080_230 0.0718931039 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
6 Hb_000170_150 0.0721631448 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
7 Hb_002784_110 0.0723680554 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
8 Hb_007576_120 0.0732827481 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
9 Hb_000166_130 0.0790083288 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006816_430 0.0793421345 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
11 Hb_025194_040 0.0813677693 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
12 Hb_000540_060 0.0817579012 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
13 Hb_000183_020 0.0838074571 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
14 Hb_000025_320 0.0838504905 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
15 Hb_002864_010 0.0843597658 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
16 Hb_001268_350 0.0846741267 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
17 Hb_000960_100 0.085007241 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
18 Hb_004543_030 0.0852750944 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
19 Hb_003371_110 0.0861759511 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
20 Hb_000395_130 0.0862923589 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]

Gene co-expression network

sample Hb_005496_110 Hb_005496_110 Hb_000035_290 Hb_000035_290 Hb_005496_110--Hb_000035_290 Hb_000788_070 Hb_000788_070 Hb_005496_110--Hb_000788_070 Hb_004108_100 Hb_004108_100 Hb_005496_110--Hb_004108_100 Hb_001080_230 Hb_001080_230 Hb_005496_110--Hb_001080_230 Hb_000170_150 Hb_000170_150 Hb_005496_110--Hb_000170_150 Hb_002784_110 Hb_002784_110 Hb_005496_110--Hb_002784_110 Hb_000166_130 Hb_000166_130 Hb_000035_290--Hb_000166_130 Hb_000343_120 Hb_000343_120 Hb_000035_290--Hb_000343_120 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_000035_290--Hb_002784_110 Hb_000788_070--Hb_002784_110 Hb_000265_230 Hb_000265_230 Hb_000788_070--Hb_000265_230 Hb_000025_710 Hb_000025_710 Hb_000788_070--Hb_000025_710 Hb_000183_020 Hb_000183_020 Hb_000788_070--Hb_000183_020 Hb_028487_010 Hb_028487_010 Hb_000788_070--Hb_028487_010 Hb_000960_100 Hb_000960_100 Hb_004108_100--Hb_000960_100 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_000025_320 Hb_000025_320 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_000003_190 Hb_000003_190 Hb_001080_230--Hb_000003_190 Hb_000092_020 Hb_000092_020 Hb_001080_230--Hb_000092_020 Hb_001080_230--Hb_000395_130 Hb_003470_080 Hb_003470_080 Hb_001080_230--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_001080_230--Hb_002872_040 Hb_003030_060 Hb_003030_060 Hb_001080_230--Hb_003030_060 Hb_000264_030 Hb_000264_030 Hb_000170_150--Hb_000264_030 Hb_159558_010 Hb_159558_010 Hb_000170_150--Hb_159558_010 Hb_001767_140 Hb_001767_140 Hb_000170_150--Hb_001767_140 Hb_003371_110 Hb_003371_110 Hb_000170_150--Hb_003371_110 Hb_000170_150--Hb_003470_080 Hb_000289_040 Hb_000289_040 Hb_000170_150--Hb_000289_040 Hb_000446_120 Hb_000446_120 Hb_002784_110--Hb_000446_120 Hb_002784_110--Hb_025194_040 Hb_001913_060 Hb_001913_060 Hb_002784_110--Hb_001913_060 Hb_002784_110--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.3898 16.5741 5.49758 4.645 11.9697 15.0042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.84395 6.2321 7.4297 9.70362 10.5711

CAGE analysis