Hb_000166_130

Information

Type -
Description -
Location Contig166: 220960-234389
Sequence    

Annotation

kegg
ID rcu:RCOM_0813690
description hypothetical protein
nr
ID XP_002518778.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0CM30
description Autophagy-related protein 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG2 PE=3 SV=1
trembl
ID B9RYJ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0813690 PE=4 SV=1
Gene Ontology
ID GO:0006914
description autophagy isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15288: 220875-227996 , PASA_asmbl_15290: 229854-230345 , PASA_asmbl_15293: 232830-234377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000166_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003029_110 0.0333049564 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
3 Hb_000343_120 0.0422650498 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
4 Hb_001195_320 0.0478140276 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
5 Hb_000035_290 0.0509105221 - - RNA recognition motif-containing family protein [Populus trichocarpa]
6 Hb_003371_110 0.0539276758 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
7 Hb_001199_100 0.0585974198 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
8 Hb_000183_020 0.0593418828 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
9 Hb_001550_060 0.0632243537 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
10 Hb_005731_030 0.0665293777 - - PREDICTED: UPF0400 protein C337.03 [Jatropha curcas]
11 Hb_025194_040 0.0672073369 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
12 Hb_000190_120 0.0673387704 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
13 Hb_009545_100 0.0680388602 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
14 Hb_000170_150 0.0701787191 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
15 Hb_003362_070 0.0702341839 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
16 Hb_006420_040 0.0715441569 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
17 Hb_010222_050 0.0730904307 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
18 Hb_000395_130 0.0733631577 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
19 Hb_004182_050 0.073544911 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X2 [Jatropha curcas]
20 Hb_000796_030 0.073782071 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000166_130 Hb_000166_130 Hb_003029_110 Hb_003029_110 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_001195_320 Hb_001195_320 Hb_000166_130--Hb_001195_320 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_003371_110 Hb_003371_110 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_003029_110--Hb_001195_320 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003029_110--Hb_003371_110 Hb_000343_120--Hb_000035_290 Hb_000028_280 Hb_000028_280 Hb_000343_120--Hb_000028_280 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_000343_120--Hb_001199_100 Hb_001195_320--Hb_003371_110 Hb_002329_040 Hb_002329_040 Hb_001195_320--Hb_002329_040 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_025194_040 Hb_025194_040 Hb_000035_290--Hb_025194_040 Hb_005496_110 Hb_005496_110 Hb_000035_290--Hb_005496_110 Hb_000395_130 Hb_000395_130 Hb_000035_290--Hb_000395_130 Hb_002784_110 Hb_002784_110 Hb_000035_290--Hb_002784_110 Hb_003371_110--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_003253_040 Hb_003253_040 Hb_001199_100--Hb_003253_040 Hb_000613_050 Hb_000613_050 Hb_001199_100--Hb_000613_050 Hb_001199_100--Hb_009545_100 Hb_172632_080 Hb_172632_080 Hb_001199_100--Hb_172632_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.17641 9.83889 4.309 5.83948 9.08348 11.5897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.75739 6.19923 6.90902 7.26942 7.67954

CAGE analysis