Hb_001195_320

Information

Type -
Description -
Location Contig1195: 182751-187926
Sequence    

Annotation

kegg
ID rcu:RCOM_1594210
description cytochrome P450, putative (EC:1.6.2.4)
nr
ID XP_012071843.1
description PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
swissprot
ID Q8RXN5
description S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana GN=TYW1 PE=2 SV=1
trembl
ID A0A067L1Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04425 PE=4 SV=1
Gene Ontology
ID GO:0005739
description s-adenosyl-l-methionine-dependent trna 4-demethylwyosine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05816: 182803-184480 , PASA_asmbl_05817: 184523-187905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_320 0.0 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
2 Hb_000166_130 0.0478140276 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003371_110 0.0515174897 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
4 Hb_002329_040 0.052613225 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
5 Hb_003029_110 0.0536650669 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
6 Hb_014361_070 0.0554131713 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
7 Hb_000183_020 0.0559371865 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
8 Hb_001550_060 0.0563311376 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
9 Hb_012395_140 0.0563402088 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
10 Hb_000390_320 0.0596085599 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_009175_020 0.0612097562 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
12 Hb_001860_040 0.0622611145 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
13 Hb_008112_030 0.0627027687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004195_200 0.0637170447 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
15 Hb_000190_120 0.0642886502 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
16 Hb_000680_090 0.0643935408 - - Protein SEY1, putative [Ricinus communis]
17 Hb_001343_040 0.064406705 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
18 Hb_021297_050 0.0648684413 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
19 Hb_007576_110 0.0653918389 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
20 Hb_009615_170 0.0665909287 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_320 Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_002329_040 Hb_002329_040 Hb_001195_320--Hb_002329_040 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_003371_110--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_002329_040--Hb_000183_020 Hb_005731_030 Hb_005731_030 Hb_003029_110--Hb_005731_030 Hb_003029_110--Hb_000343_120 Hb_010222_050 Hb_010222_050 Hb_003029_110--Hb_010222_050 Hb_003029_110--Hb_003371_110 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_007576_110 Hb_007576_110 Hb_014361_070--Hb_007576_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_014361_070--Hb_002823_030 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7551 17.1879 9.44252 12.6488 18.6944 20.3212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.27876 9.58006 11.6827 14.6224 12.1919

CAGE analysis