Hb_000183_020

Information

Type transcription factor
Description TF Family: C3H
Location Contig183: 27978-34355
Sequence    

Annotation

kegg
ID rcu:RCOM_1278130
description hypothetical protein
nr
ID XP_012087634.1
description PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
swissprot
ID Q9LIH5
description Zinc finger CCCH domain-containing protein 38 OS=Arabidopsis thaliana GN=At3g18640 PE=2 SV=1
trembl
ID A0A067JZ23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17852: 30375-32107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000183_020 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
2 Hb_002329_040 0.0531546073 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
3 Hb_003044_020 0.0543699805 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
4 Hb_001195_320 0.0559371865 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
5 Hb_003362_070 0.0573990098 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
6 Hb_000166_130 0.0593418828 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000922_370 0.0604980301 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
8 Hb_007426_130 0.063939878 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_009476_040 0.0641691138 - - conserved hypothetical protein [Ricinus communis]
10 Hb_048476_180 0.0656089493 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
11 Hb_000740_100 0.0675115647 - - calpain, putative [Ricinus communis]
12 Hb_002784_110 0.0679073631 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
13 Hb_001199_100 0.0679390738 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
14 Hb_000035_290 0.0685579397 - - RNA recognition motif-containing family protein [Populus trichocarpa]
15 Hb_003371_110 0.0685677149 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
16 Hb_002107_070 0.0694759501 - - hypothetical protein RCOM_1598630 [Ricinus communis]
17 Hb_009175_020 0.0702621963 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
18 Hb_004935_030 0.0706307709 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
19 Hb_025194_040 0.0716853917 - - PREDICTED: uncharacterized protein LOC105644854 isoform X2 [Jatropha curcas]
20 Hb_001343_040 0.0726480378 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]

Gene co-expression network

sample Hb_000183_020 Hb_000183_020 Hb_002329_040 Hb_002329_040 Hb_000183_020--Hb_002329_040 Hb_003044_020 Hb_003044_020 Hb_000183_020--Hb_003044_020 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_003362_070 Hb_003362_070 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000922_370 Hb_000922_370 Hb_000183_020--Hb_000922_370 Hb_002107_070 Hb_002107_070 Hb_002329_040--Hb_002107_070 Hb_027380_140 Hb_027380_140 Hb_002329_040--Hb_027380_140 Hb_000740_100 Hb_000740_100 Hb_002329_040--Hb_000740_100 Hb_012395_140 Hb_012395_140 Hb_002329_040--Hb_012395_140 Hb_002329_040--Hb_001195_320 Hb_003044_020--Hb_000922_370 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003044_020--Hb_003362_070 Hb_003044_020--Hb_002329_040 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003362_070--Hb_003966_030 Hb_003362_070--Hb_000922_370 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_000166_130--Hb_003371_110 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_000922_370--Hb_002329_040 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.39961 6.90797 3.13785 4.10353 6.93121 9.55082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.27991 3.30463 4.3213 6.04201 5.83498

CAGE analysis