Hb_002174_020

Information

Type -
Description -
Location Contig2174: 10475-17838
Sequence    

Annotation

kegg
ID rcu:RCOM_0804480
description ring finger protein, putative
nr
ID XP_002516614.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID B9RS95
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0804480 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase at1g63170

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22455: 10703-17536 , PASA_asmbl_22456: 10529-17702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002174_020 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_008112_030 0.0451301905 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001454_280 0.0478564547 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
4 Hb_006252_020 0.049600038 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
5 Hb_000160_290 0.0541533566 - - unnamed protein product [Vitis vinifera]
6 Hb_005731_090 0.0541771355 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
7 Hb_007635_030 0.0551261856 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
8 Hb_000922_370 0.05652072 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
9 Hb_004453_110 0.0567487633 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
10 Hb_002329_040 0.0605790631 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_000796_190 0.0613628612 - - hypothetical protein F383_31148 [Gossypium arboreum]
12 Hb_003044_020 0.0615787071 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
13 Hb_002823_030 0.0621227075 - - -
14 Hb_009112_010 0.063161989 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_003371_110 0.0639020724 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
16 Hb_002615_090 0.0640302073 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
17 Hb_027380_140 0.0670854307 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
18 Hb_003680_150 0.0682164041 - - srpk, putative [Ricinus communis]
19 Hb_001417_050 0.0688727036 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
20 Hb_003124_130 0.0690867496 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002174_020 Hb_002174_020 Hb_008112_030 Hb_008112_030 Hb_002174_020--Hb_008112_030 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_006252_020 Hb_006252_020 Hb_002174_020--Hb_006252_020 Hb_000160_290 Hb_000160_290 Hb_002174_020--Hb_000160_290 Hb_005731_090 Hb_005731_090 Hb_002174_020--Hb_005731_090 Hb_007635_030 Hb_007635_030 Hb_002174_020--Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_008112_030--Hb_005731_090 Hb_008112_030--Hb_006252_020 Hb_001140_350 Hb_001140_350 Hb_001454_280--Hb_001140_350 Hb_001454_280--Hb_007635_030 Hb_001454_280--Hb_006252_020 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_005731_090--Hb_004453_110 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_005731_090--Hb_000160_290 Hb_030627_060 Hb_030627_060 Hb_005731_090--Hb_030627_060 Hb_002329_040 Hb_002329_040 Hb_007635_030--Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_007635_030--Hb_002107_070 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.0067 42.1646 21.1497 29.3944 46.6894 50.0073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3152 18.5663 20.3823 28.1313 24.5639

CAGE analysis