Hb_008112_030

Information

Type -
Description -
Location Contig8112: 41055-45824
Sequence    

Annotation

kegg
ID rcu:RCOM_1185620
description hypothetical protein
nr
ID XP_002527429.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DCP5
description Protein saal1 OS=Xenopus laevis GN=saal1 PE=2 SV=1
trembl
ID B9SN60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1185620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59255: 41102-42872 , PASA_asmbl_59256: 41878-42184 , PASA_asmbl_59257: 43397-46021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008112_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002174_020 0.0451301905 - - ring finger protein, putative [Ricinus communis]
3 Hb_007635_030 0.0520540942 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
4 Hb_000960_050 0.0527851351 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
5 Hb_004453_110 0.0569464147 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
6 Hb_005731_090 0.0582181896 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
7 Hb_006252_020 0.0590488028 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
8 Hb_009112_010 0.0607395423 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
9 Hb_001195_320 0.0627027687 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
10 Hb_001454_280 0.0642447373 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
11 Hb_002615_090 0.0643247096 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
12 Hb_000162_280 0.0668889637 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
13 Hb_002329_040 0.0674696041 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_003044_020 0.0694758168 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
15 Hb_000896_080 0.0712234479 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Vitis vinifera]
16 Hb_000261_030 0.0715658659 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
17 Hb_000680_090 0.073277787 - - Protein SEY1, putative [Ricinus communis]
18 Hb_006882_020 0.0733720208 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004659_080 0.0734073916 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
20 Hb_003371_110 0.0734898546 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_008112_030 Hb_008112_030 Hb_002174_020 Hb_002174_020 Hb_008112_030--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_008112_030--Hb_007635_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_005731_090 Hb_005731_090 Hb_008112_030--Hb_005731_090 Hb_006252_020 Hb_006252_020 Hb_008112_030--Hb_006252_020 Hb_001454_280 Hb_001454_280 Hb_002174_020--Hb_001454_280 Hb_002174_020--Hb_006252_020 Hb_000160_290 Hb_000160_290 Hb_002174_020--Hb_000160_290 Hb_002174_020--Hb_005731_090 Hb_002174_020--Hb_007635_030 Hb_007635_030--Hb_001454_280 Hb_002329_040 Hb_002329_040 Hb_007635_030--Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_007635_030--Hb_002107_070 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170 Hb_000230_090 Hb_000230_090 Hb_000960_050--Hb_000230_090 Hb_009112_010 Hb_009112_010 Hb_000960_050--Hb_009112_010 Hb_000406_230 Hb_000406_230 Hb_000960_050--Hb_000406_230 Hb_000914_120 Hb_000914_120 Hb_000960_050--Hb_000914_120 Hb_000174_060 Hb_000174_060 Hb_000960_050--Hb_000174_060 Hb_000429_220 Hb_000429_220 Hb_004453_110--Hb_000429_220 Hb_004453_110--Hb_005731_090 Hb_089140_050 Hb_089140_050 Hb_004453_110--Hb_089140_050 Hb_004453_110--Hb_002174_020 Hb_000896_080 Hb_000896_080 Hb_004453_110--Hb_000896_080 Hb_067193_010 Hb_067193_010 Hb_005731_090--Hb_067193_010 Hb_005731_090--Hb_000160_290 Hb_030627_060 Hb_030627_060 Hb_005731_090--Hb_030627_060 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_006252_020--Hb_001454_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0335 18.9646 10.234 12.4887 21.1242 20.6741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.036 8.39839 8.86107 12.6231 9.95973

CAGE analysis