Hb_004128_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig4128: 54064-59467
Sequence    

Annotation

kegg
ID rcu:RCOM_0819850
description zinc finger protein, putative
nr
ID XP_002525195.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q0JHZ2
description Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2
trembl
ID B9SGS6
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0819850 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40852: 54197-59362 , PASA_asmbl_40853: 54234-59066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_050 0.0 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
2 Hb_006252_020 0.0572648279 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
3 Hb_003785_040 0.0584098253 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_002042_140 0.0607253676 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
5 Hb_005489_080 0.0626722918 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000768_070 0.064317222 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
7 Hb_000190_120 0.0649181888 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
8 Hb_000796_030 0.0664685133 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
9 Hb_154114_010 0.0674282693 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
10 Hb_002615_090 0.0681562987 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
11 Hb_003371_110 0.0693707312 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
12 Hb_002174_020 0.0702121516 - - ring finger protein, putative [Ricinus communis]
13 Hb_002823_030 0.0707582974 - - -
14 Hb_183963_030 0.0721363486 - - DNA binding protein, putative [Ricinus communis]
15 Hb_007676_100 0.0721567554 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
16 Hb_003044_020 0.073680463 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_000046_010 0.0756502701 - - PREDICTED: histidine-containing phosphotransfer protein 1 [Jatropha curcas]
18 Hb_000743_040 0.0758598659 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
19 Hb_000035_290 0.0761491506 - - RNA recognition motif-containing family protein [Populus trichocarpa]
20 Hb_031527_020 0.0767355599 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004128_050 Hb_004128_050 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_006831_110 Hb_006831_110 Hb_002042_140--Hb_006831_110 Hb_000002_040 Hb_000002_040 Hb_002042_140--Hb_000002_040 Hb_010695_020 Hb_010695_020 Hb_002042_140--Hb_010695_020 Hb_000743_040 Hb_000743_040 Hb_002042_140--Hb_000743_040 Hb_007558_120 Hb_007558_120 Hb_002042_140--Hb_007558_120 Hb_005489_080--Hb_031527_020 Hb_000732_120 Hb_000732_120 Hb_005489_080--Hb_000732_120 Hb_005489_080--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_000768_070--Hb_006252_020 Hb_001417_050 Hb_001417_050 Hb_000768_070--Hb_001417_050 Hb_000574_440 Hb_000574_440 Hb_000768_070--Hb_000574_440 Hb_009411_010 Hb_009411_010 Hb_000768_070--Hb_009411_010 Hb_000768_070--Hb_003044_020 Hb_007576_110 Hb_007576_110 Hb_000190_120--Hb_007576_110 Hb_002823_030 Hb_002823_030 Hb_000190_120--Hb_002823_030 Hb_003371_110 Hb_003371_110 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_003680_150 Hb_003680_150 Hb_000190_120--Hb_003680_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.5355 76.0315 30.021 39.0556 87.1439 74.7759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.4494 37.5284 42.5963 38.7808 38.2114

CAGE analysis