Hb_000768_070

Information

Type transcription factor
Description TF Family: SNF2
Location Contig768: 63936-88302
Sequence    

Annotation

kegg
ID pop:POPTR_0013s06470g
description POPTRDRAFT_823728; SNF2 domain-containing family protein
nr
ID XP_012070332.1
description PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
swissprot
ID B5BT18
description TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE=1 SV=1
trembl
ID B9I6D4
description SNF2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s06470g PE=4 SV=2
Gene Ontology
ID GO:0005524
description tata-binding protein-associated factor btaf1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57499: 63667-72112 , PASA_asmbl_57501: 64070-64298 , PASA_asmbl_57502: 73470-75232 , PASA_asmbl_57503: 75311-77505 , PASA_asmbl_57504: 77568-78738 , PASA_asmbl_57505: 78775-86710 , PASA_asmbl_57506: 86832-88203
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_070 0.0 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
2 Hb_006252_020 0.0638784843 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
3 Hb_004128_050 0.064317222 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
4 Hb_001417_050 0.0645649543 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
5 Hb_000574_440 0.0649602385 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
6 Hb_009411_010 0.0672983668 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
7 Hb_003044_020 0.0710426219 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
8 Hb_000502_050 0.0715709922 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
9 Hb_003785_040 0.072586116 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
10 Hb_006882_020 0.0742036958 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002221_050 0.0760678676 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
12 Hb_004453_110 0.0763443431 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
13 Hb_002042_140 0.0772096713 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
14 Hb_001718_090 0.0773154567 - - PREDICTED: coiled-coil domain-containing protein 97 [Jatropha curcas]
15 Hb_000320_380 0.0777300385 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
16 Hb_002174_020 0.0777788825 - - ring finger protein, putative [Ricinus communis]
17 Hb_020665_030 0.0778964829 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003371_110 0.0783785353 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
19 Hb_144831_010 0.0786280471 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
20 Hb_000084_250 0.079464839 - - nucleolar phosphoprotein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000768_070 Hb_000768_070 Hb_006252_020 Hb_006252_020 Hb_000768_070--Hb_006252_020 Hb_004128_050 Hb_004128_050 Hb_000768_070--Hb_004128_050 Hb_001417_050 Hb_001417_050 Hb_000768_070--Hb_001417_050 Hb_000574_440 Hb_000574_440 Hb_000768_070--Hb_000574_440 Hb_009411_010 Hb_009411_010 Hb_000768_070--Hb_009411_010 Hb_003044_020 Hb_003044_020 Hb_000768_070--Hb_003044_020 Hb_002174_020 Hb_002174_020 Hb_006252_020--Hb_002174_020 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_006252_020--Hb_003044_020 Hb_006252_020--Hb_004128_050 Hb_001454_280 Hb_001454_280 Hb_006252_020--Hb_001454_280 Hb_008112_030 Hb_008112_030 Hb_006252_020--Hb_008112_030 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_001493_040 Hb_001493_040 Hb_001417_050--Hb_001493_040 Hb_000160_290 Hb_000160_290 Hb_001417_050--Hb_000160_290 Hb_010315_090 Hb_010315_090 Hb_001417_050--Hb_010315_090 Hb_002422_050 Hb_002422_050 Hb_001417_050--Hb_002422_050 Hb_001417_050--Hb_006252_020 Hb_000796_190 Hb_000796_190 Hb_001417_050--Hb_000796_190 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_003544_100 Hb_003544_100 Hb_009411_010--Hb_003544_100 Hb_000101_240 Hb_000101_240 Hb_009411_010--Hb_000101_240 Hb_003938_080 Hb_003938_080 Hb_009411_010--Hb_003938_080 Hb_001797_050 Hb_001797_050 Hb_009411_010--Hb_001797_050 Hb_048476_180 Hb_048476_180 Hb_009411_010--Hb_048476_180 Hb_000502_050 Hb_000502_050 Hb_009411_010--Hb_000502_050 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.096 15.3555 8.22663 6.10893 19.2369 19.6111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.13085 7.80638 8.37476 7.97057 10.0752

CAGE analysis