Hb_000574_440

Information

Type -
Description -
Location Contig574: 392158-399196
Sequence    

Annotation

kegg
ID rcu:RCOM_0901110
description hypothetical protein
nr
ID XP_012073149.1
description PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06117 PE=4 SV=1
Gene Ontology
ID GO:0035091
description phox domain-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49594: 392264-395552 , PASA_asmbl_49596: 396463-399268
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_440 0.0 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
2 Hb_009503_030 0.0604967124 - - protein dimerization, putative [Ricinus communis]
3 Hb_000084_250 0.0608267153 - - nucleolar phosphoprotein, putative [Ricinus communis]
4 Hb_002221_050 0.0628917013 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
5 Hb_027380_140 0.0634967924 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
6 Hb_006831_110 0.0643504637 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
7 Hb_000768_070 0.0649602385 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
8 Hb_000502_050 0.0668433955 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
9 Hb_003785_040 0.06795214 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
10 Hb_001599_030 0.06838277 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
11 Hb_008695_110 0.0691627328 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
12 Hb_009411_010 0.0691904226 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
13 Hb_000320_380 0.0705393724 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
14 Hb_000320_200 0.0713863086 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
15 Hb_003018_130 0.072317911 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
16 Hb_001143_250 0.072368763 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
17 Hb_005993_050 0.0735287392 - - Protein AFR, putative [Ricinus communis]
18 Hb_007307_020 0.0753071089 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000107_400 0.0753990597 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]
20 Hb_002042_140 0.0758445369 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]

Gene co-expression network

sample Hb_000574_440 Hb_000574_440 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_008695_110 Hb_008695_110 Hb_000084_250--Hb_008695_110 Hb_002025_060 Hb_002025_060 Hb_000084_250--Hb_002025_060 Hb_000680_090 Hb_000680_090 Hb_000084_250--Hb_000680_090 Hb_000084_250--Hb_006831_110 Hb_000777_050 Hb_000777_050 Hb_000084_250--Hb_000777_050 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_002329_040 Hb_002329_040 Hb_027380_140--Hb_002329_040 Hb_008024_030 Hb_008024_030 Hb_027380_140--Hb_008024_030 Hb_012053_080 Hb_012053_080 Hb_027380_140--Hb_012053_080 Hb_007062_020 Hb_007062_020 Hb_027380_140--Hb_007062_020 Hb_000470_070 Hb_000470_070 Hb_027380_140--Hb_000470_070 Hb_000071_030 Hb_000071_030 Hb_006831_110--Hb_000071_030 Hb_002042_140 Hb_002042_140 Hb_006831_110--Hb_002042_140 Hb_005321_020 Hb_005321_020 Hb_006831_110--Hb_005321_020 Hb_000283_070 Hb_000283_070 Hb_006831_110--Hb_000283_070 Hb_009620_050 Hb_009620_050 Hb_006831_110--Hb_009620_050 Hb_000107_500 Hb_000107_500 Hb_006831_110--Hb_000107_500 Hb_006252_020 Hb_006252_020 Hb_000768_070--Hb_006252_020 Hb_004128_050 Hb_004128_050 Hb_000768_070--Hb_004128_050 Hb_001417_050 Hb_001417_050 Hb_000768_070--Hb_001417_050 Hb_009411_010 Hb_009411_010 Hb_000768_070--Hb_009411_010 Hb_003044_020 Hb_003044_020 Hb_000768_070--Hb_003044_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6223 12.4827 8.92886 6.08157 17.9511 14.9422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0247 6.18907 10.6821 8.2423 9.89578

CAGE analysis