Hb_000320_380

Information

Type -
Description -
Location Contig320: 293365-300986
Sequence    

Annotation

kegg
ID rcu:RCOM_0904580
description hypothetical protein
nr
ID XP_012091340.1
description PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
swissprot
ID Q54FL0
description Myb-like protein O OS=Dictyostelium discoideum GN=mybO PE=3 SV=1
trembl
ID A0A067JMM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21215 PE=4 SV=1
Gene Ontology
ID GO:0003682
description homeodomain-like superfamily isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33829: 293352-300857 , PASA_asmbl_33830: 293352-300857 , PASA_asmbl_33831: 293352-300857 , PASA_asmbl_33832: 299889-300844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_380 0.0 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
2 Hb_015026_050 0.0400714173 - - XPA-binding protein, putative [Ricinus communis]
3 Hb_002221_050 0.046689738 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
4 Hb_019153_020 0.0633240794 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
5 Hb_007885_070 0.0635227025 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
6 Hb_140049_020 0.0650320697 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
7 Hb_000574_440 0.0705393724 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
8 Hb_007229_040 0.0708658132 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
9 Hb_147737_010 0.0711427698 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
10 Hb_000329_130 0.0730671578 - - beta-tubulin cofactor d, putative [Ricinus communis]
11 Hb_010315_090 0.0757412109 - - suppressor of ty, putative [Ricinus communis]
12 Hb_000107_530 0.076011576 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_000768_070 0.0777300385 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
14 Hb_001771_120 0.0787323921 - - K+ transport growth defect-like protein [Hevea brasiliensis]
15 Hb_007943_120 0.0792614084 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X4 [Jatropha curcas]
16 Hb_000320_200 0.0796632144 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
17 Hb_000529_260 0.0804775631 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
18 Hb_000107_500 0.0818505139 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
19 Hb_000417_160 0.0825151291 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
20 Hb_000032_490 0.0826099901 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]

Gene co-expression network

sample Hb_000320_380 Hb_000320_380 Hb_015026_050 Hb_015026_050 Hb_000320_380--Hb_015026_050 Hb_002221_050 Hb_002221_050 Hb_000320_380--Hb_002221_050 Hb_019153_020 Hb_019153_020 Hb_000320_380--Hb_019153_020 Hb_007885_070 Hb_007885_070 Hb_000320_380--Hb_007885_070 Hb_140049_020 Hb_140049_020 Hb_000320_380--Hb_140049_020 Hb_000574_440 Hb_000574_440 Hb_000320_380--Hb_000574_440 Hb_147737_010 Hb_147737_010 Hb_015026_050--Hb_147737_010 Hb_015026_050--Hb_002221_050 Hb_000329_130 Hb_000329_130 Hb_015026_050--Hb_000329_130 Hb_015026_050--Hb_007885_070 Hb_003847_120 Hb_003847_120 Hb_015026_050--Hb_003847_120 Hb_000424_010 Hb_000424_010 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_019153_020--Hb_002221_050 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_007885_070--Hb_000417_160 Hb_007885_070--Hb_000529_260 Hb_007885_070--Hb_019153_020 Hb_007885_070--Hb_000424_010 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.7337 27.6579 14.0999 9.37425 35.4101 31.257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4987 10.5669 18.2381 12.6379 13.8045

CAGE analysis