Hb_000320_200

Information

Type -
Description -
Location Contig320: 152905-157354
Sequence    

Annotation

kegg
ID rcu:RCOM_0903860
description hepatocellular carcinoma-associated antigen, putative
nr
ID XP_012091323.1
description PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
swissprot
ID Q9NYH9
description U3 small nucleolar RNA-associated protein 6 homolog OS=Homo sapiens GN=UTP6 PE=2 SV=2
trembl
ID A0A067JML4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21200 PE=4 SV=1
Gene Ontology
ID GO:0005634
description u3 small nucleolar rna-associated protein 6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33793: 153155-156039 , PASA_asmbl_33794: 156124-157362
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_200 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
2 Hb_001599_030 0.0573359892 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
3 Hb_002221_050 0.0578563041 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
4 Hb_000714_050 0.0596162193 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
5 Hb_000072_350 0.0619953177 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
6 Hb_003952_150 0.0651905541 - - PREDICTED: cactin [Jatropha curcas]
7 Hb_000743_040 0.0655779499 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
8 Hb_001235_200 0.0658427167 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009411_010 0.0665033071 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
10 Hb_010381_060 0.0670454117 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
11 Hb_000529_260 0.0677329324 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
12 Hb_010193_050 0.0679315337 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000329_090 0.068312501 - - arginase, putative [Ricinus communis]
14 Hb_000107_500 0.0698755794 - - PREDICTED: protein FAR1-RELATED SEQUENCE 9 [Jatropha curcas]
15 Hb_002301_080 0.070001167 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
16 Hb_001541_020 0.0713755359 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
17 Hb_000574_440 0.0713863086 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
18 Hb_020665_030 0.0723440139 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000510_310 0.073504583 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
20 Hb_000207_310 0.073742092 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]

Gene co-expression network

sample Hb_000320_200 Hb_000320_200 Hb_001599_030 Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000714_050 Hb_000714_050 Hb_000320_200--Hb_000714_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040 Hb_001235_200 Hb_001235_200 Hb_001599_030--Hb_001235_200 Hb_003544_100 Hb_003544_100 Hb_001599_030--Hb_003544_100 Hb_010381_060 Hb_010381_060 Hb_001599_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_001599_030--Hb_002749_110 Hb_009411_010 Hb_009411_010 Hb_001599_030--Hb_009411_010 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_002221_050--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_002221_050--Hb_007885_070 Hb_000529_260 Hb_000529_260 Hb_002221_050--Hb_000529_260 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000714_050--Hb_010381_060 Hb_000714_050--Hb_001235_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000329_130 Hb_000329_130 Hb_000714_050--Hb_000329_130 Hb_000072_350--Hb_000743_040 Hb_001502_060 Hb_001502_060 Hb_000072_350--Hb_001502_060 Hb_000072_350--Hb_000529_260 Hb_000072_350--Hb_003952_150 Hb_000072_350--Hb_000329_090 Hb_016898_010 Hb_016898_010 Hb_003952_150--Hb_016898_010 Hb_000084_120 Hb_000084_120 Hb_003952_150--Hb_000084_120 Hb_000920_210 Hb_000920_210 Hb_003952_150--Hb_000920_210 Hb_003362_070 Hb_003362_070 Hb_003952_150--Hb_003362_070 Hb_003952_150--Hb_010381_060 Hb_000743_040--Hb_000329_090 Hb_000600_070 Hb_000600_070 Hb_000743_040--Hb_000600_070 Hb_003428_070 Hb_003428_070 Hb_000743_040--Hb_003428_070 Hb_000567_050 Hb_000567_050 Hb_000743_040--Hb_000567_050 Hb_000743_040--Hb_010381_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6229 12.3841 6.47137 7.12479 22.4984 18.9624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.8195 8.54576 10.0615 10.7632 10.1204

CAGE analysis