Hb_001502_060

Information

Type -
Description -
Location Contig1502: 86508-96740
Sequence    

Annotation

kegg
ID rcu:RCOM_1617850
description DNA mismatch repair protein MSH2, putative
nr
ID XP_002511977.1
description DNA mismatch repair protein MSH2, putative [Ricinus communis]
swissprot
ID O24617
description DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana GN=MSH2 PE=1 SV=1
trembl
ID B9RE38
description DNA mismatch repair protein MSH2, putative OS=Ricinus communis GN=RCOM_1617850 PE=3 SV=1
Gene Ontology
ID GO:0005886
description dna mismatch repair protein msh2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12576: 80620-88365 , PASA_asmbl_12577: 87094-88365 , PASA_asmbl_12578: 88496-88972 , PASA_asmbl_12579: 90399-94044 , PASA_asmbl_12580: 94989-96408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001502_060 0.0 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
2 Hb_000072_350 0.0617111303 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
3 Hb_007520_030 0.0713858933 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]
4 Hb_000529_260 0.0756813533 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
5 Hb_002477_130 0.0762462161 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000424_010 0.0822552194 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
7 Hb_004128_050 0.0822834149 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
8 Hb_000743_040 0.0843534874 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
9 Hb_000510_310 0.0860912028 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_106371_010 0.0882545786 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_001541_020 0.089335757 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
12 Hb_002221_050 0.0895678323 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
13 Hb_002499_070 0.089791076 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
14 Hb_000320_200 0.0901432069 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
15 Hb_003777_160 0.0903302789 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
16 Hb_008406_110 0.0909699835 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
17 Hb_000946_120 0.0918317259 - - DNA binding protein, putative [Ricinus communis]
18 Hb_004162_280 0.0920355179 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
19 Hb_000139_250 0.0934595613 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
20 Hb_000190_120 0.0935892116 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]

Gene co-expression network

sample Hb_001502_060 Hb_001502_060 Hb_000072_350 Hb_000072_350 Hb_001502_060--Hb_000072_350 Hb_007520_030 Hb_007520_030 Hb_001502_060--Hb_007520_030 Hb_000529_260 Hb_000529_260 Hb_001502_060--Hb_000529_260 Hb_002477_130 Hb_002477_130 Hb_001502_060--Hb_002477_130 Hb_000424_010 Hb_000424_010 Hb_001502_060--Hb_000424_010 Hb_004128_050 Hb_004128_050 Hb_001502_060--Hb_004128_050 Hb_000743_040 Hb_000743_040 Hb_000072_350--Hb_000743_040 Hb_000320_200 Hb_000320_200 Hb_000072_350--Hb_000320_200 Hb_000072_350--Hb_000529_260 Hb_003952_150 Hb_003952_150 Hb_000072_350--Hb_003952_150 Hb_000329_090 Hb_000329_090 Hb_000072_350--Hb_000329_090 Hb_002783_310 Hb_002783_310 Hb_007520_030--Hb_002783_310 Hb_000059_140 Hb_000059_140 Hb_007520_030--Hb_000059_140 Hb_008406_110 Hb_008406_110 Hb_007520_030--Hb_008406_110 Hb_001172_010 Hb_001172_010 Hb_007520_030--Hb_001172_010 Hb_000771_180 Hb_000771_180 Hb_007520_030--Hb_000771_180 Hb_002221_050 Hb_002221_050 Hb_000529_260--Hb_002221_050 Hb_000529_260--Hb_000424_010 Hb_007885_070 Hb_007885_070 Hb_000529_260--Hb_007885_070 Hb_019153_020 Hb_019153_020 Hb_000529_260--Hb_019153_020 Hb_000510_310 Hb_000510_310 Hb_000529_260--Hb_000510_310 Hb_000529_260--Hb_000320_200 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_000035_040 Hb_000035_040 Hb_000424_010--Hb_000035_040 Hb_002652_040 Hb_002652_040 Hb_000424_010--Hb_002652_040 Hb_000424_010--Hb_002221_050 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1927 9.7102 4.46536 5.58333 19.9869 11.2684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.25169 6.13103 7.12021 7.83087 5.27448

CAGE analysis