Hb_000640_220

Information

Type -
Description -
Location Contig640: 182023-186322
Sequence    

Annotation

kegg
ID tcc:TCM_004829
description Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1
nr
ID XP_012082923.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
swissprot
ID Q9C835
description Peptidyl-prolyl cis-trans isomerase CYP21-4 OS=Arabidopsis thaliana GN=CYP21-4 PE=2 SV=1
trembl
ID A0A067K7P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14046 PE=3 SV=1
Gene Ontology
ID GO:0005794
description cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52112: 182058-186337 , PASA_asmbl_52113: 182916-186357 , PASA_asmbl_52116: 187132-191428
cDNA
(Sanger)
(ID:Location)		 010_O24.ab1: 182916-186357 , 015_O08.ab1: 182465-186335

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_220 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
2 Hb_021422_010 0.0703213517 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
3 Hb_002477_130 0.0720337601 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000104_080 0.0733144137 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
5 Hb_001584_290 0.0742903841 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_000365_140 0.0765489415 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
7 Hb_003126_100 0.0781403308 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
8 Hb_003018_060 0.0785329956 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
9 Hb_006623_020 0.0786399653 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]
10 Hb_005895_040 0.0802085368 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
11 Hb_000640_020 0.0814317749 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
12 Hb_091384_010 0.0816924734 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
13 Hb_000375_030 0.0822994558 - - -
14 Hb_000914_080 0.0833406149 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000480_010 0.0835669739 - - conserved hypothetical protein [Ricinus communis]
16 Hb_028707_090 0.0835857483 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
17 Hb_000923_040 0.0842819545 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
18 Hb_004701_030 0.0849080418 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_000002_490 0.0854634214 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
20 Hb_030827_030 0.0856664483 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]

Gene co-expression network

sample Hb_000640_220 Hb_000640_220 Hb_021422_010 Hb_021422_010 Hb_000640_220--Hb_021422_010 Hb_002477_130 Hb_002477_130 Hb_000640_220--Hb_002477_130 Hb_000104_080 Hb_000104_080 Hb_000640_220--Hb_000104_080 Hb_001584_290 Hb_001584_290 Hb_000640_220--Hb_001584_290 Hb_000365_140 Hb_000365_140 Hb_000640_220--Hb_000365_140 Hb_003126_100 Hb_003126_100 Hb_000640_220--Hb_003126_100 Hb_006623_020 Hb_006623_020 Hb_021422_010--Hb_006623_020 Hb_003018_060 Hb_003018_060 Hb_021422_010--Hb_003018_060 Hb_000032_490 Hb_000032_490 Hb_021422_010--Hb_000032_490 Hb_001828_160 Hb_001828_160 Hb_021422_010--Hb_001828_160 Hb_000808_250 Hb_000808_250 Hb_021422_010--Hb_000808_250 Hb_006960_050 Hb_006960_050 Hb_021422_010--Hb_006960_050 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000358_250 Hb_000358_250 Hb_002477_130--Hb_000358_250 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_001584_290--Hb_008143_030 Hb_010222_080 Hb_010222_080 Hb_001584_290--Hb_010222_080 Hb_002587_020 Hb_002587_020 Hb_001584_290--Hb_002587_020 Hb_001584_290--Hb_000923_040 Hb_000946_120 Hb_000946_120 Hb_000365_140--Hb_000946_120 Hb_000365_140--Hb_000032_490 Hb_000422_140 Hb_000422_140 Hb_000365_140--Hb_000422_140 Hb_000365_140--Hb_005895_040 Hb_002888_070 Hb_002888_070 Hb_003126_100--Hb_002888_070 Hb_000480_010 Hb_000480_010 Hb_003126_100--Hb_000480_010 Hb_000002_490 Hb_000002_490 Hb_003126_100--Hb_000002_490 Hb_002749_110 Hb_002749_110 Hb_003126_100--Hb_002749_110 Hb_000914_080 Hb_000914_080 Hb_003126_100--Hb_000914_080 Hb_002093_030 Hb_002093_030 Hb_003126_100--Hb_002093_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
90.8514 44.1398 50.8888 44.1979 144.272 93.2611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.5606 43.8254 35.0549 33.2849 27.5512

CAGE analysis