Hb_000946_120

Information

Type -
Description -
Location Contig946: 148483-150814
Sequence    

Annotation

kegg
ID rcu:RCOM_1416870
description DNA binding protein, putative
nr
ID XP_002531081.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYL2
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1416870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63268: 149139-149760 , PASA_asmbl_63269: 150470-162720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_120 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_012132_030 0.0497760167 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
3 Hb_144787_030 0.0677832366 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
4 Hb_000032_490 0.0686881167 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
5 Hb_000365_140 0.0716698094 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
6 Hb_000422_140 0.0726854318 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
7 Hb_001541_260 0.0743757818 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
8 Hb_010222_080 0.0775422719 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
9 Hb_001541_020 0.0823841419 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
10 Hb_004162_280 0.0824328282 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
11 Hb_001083_030 0.0862204687 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
12 Hb_002221_050 0.0873310329 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
13 Hb_002367_130 0.088160761 - - UNC-50 family protein isoform 1 [Theobroma cacao]
14 Hb_000236_100 0.0894657067 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
15 Hb_002499_070 0.0912807007 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
16 Hb_001502_060 0.0918317259 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
17 Hb_000139_250 0.0927524615 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
18 Hb_002942_220 0.0940687287 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
19 Hb_000465_470 0.0943393053 - - unknown [Picea sitchensis]
20 Hb_000003_290 0.0949739974 - - hypothetical protein JCGZ_24486 [Jatropha curcas]

Gene co-expression network

sample Hb_000946_120 Hb_000946_120 Hb_012132_030 Hb_012132_030 Hb_000946_120--Hb_012132_030 Hb_144787_030 Hb_144787_030 Hb_000946_120--Hb_144787_030 Hb_000032_490 Hb_000032_490 Hb_000946_120--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_000946_120--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_000946_120--Hb_000422_140 Hb_001541_260 Hb_001541_260 Hb_000946_120--Hb_001541_260 Hb_017168_010 Hb_017168_010 Hb_012132_030--Hb_017168_010 Hb_010222_080 Hb_010222_080 Hb_012132_030--Hb_010222_080 Hb_012132_030--Hb_001541_260 Hb_012132_030--Hb_144787_030 Hb_001136_100 Hb_001136_100 Hb_012132_030--Hb_001136_100 Hb_004162_280 Hb_004162_280 Hb_144787_030--Hb_004162_280 Hb_144787_030--Hb_001541_260 Hb_000139_250 Hb_000139_250 Hb_144787_030--Hb_000139_250 Hb_000236_100 Hb_000236_100 Hb_144787_030--Hb_000236_100 Hb_144787_030--Hb_000422_140 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_000032_490--Hb_001541_260 Hb_000032_490--Hb_000365_140 Hb_002477_130 Hb_002477_130 Hb_000365_140--Hb_002477_130 Hb_000365_140--Hb_000422_140 Hb_000640_220 Hb_000640_220 Hb_000365_140--Hb_000640_220 Hb_005895_040 Hb_005895_040 Hb_000365_140--Hb_005895_040 Hb_000422_140--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000422_140--Hb_004656_060 Hb_000422_140--Hb_002477_130 Hb_001541_260--Hb_000236_100 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1097 21.2527 11.7748 9.1323 50.4168 26.9526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1941 17.5753 21.0449 10.9046 13.9078

CAGE analysis