Hb_000465_470

Information

Type -
Description -
Location Contig465: 445974-450023
Sequence    

Annotation

kegg
ID rcu:RCOM_2039430
description hypothetical protein
nr
ID ADE76006.1
description unknown [Picea sitchensis]
swissprot
ID -
description -
trembl
ID A0A0A9IBV3
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44013: 445248-450105 , PASA_asmbl_44015: 417521-450277 , PASA_asmbl_44019: 448633-449468 , PASA_asmbl_44020: 417521-446647
cDNA
(Sanger)
(ID:Location)		 038_D01.ab1: 445509-445623

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_470 0.0 - - unknown [Picea sitchensis]
2 Hb_001541_260 0.0721124341 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
3 Hb_106552_050 0.08061537 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
4 Hb_000236_100 0.083903803 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
5 Hb_000663_040 0.0845446668 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
6 Hb_002301_220 0.0855158043 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
7 Hb_000032_490 0.0862123491 - - PREDICTED: uncharacterized protein At4g10930-like [Jatropha curcas]
8 Hb_007164_020 0.0865706127 - - hypothetical protein glysoja_025872 [Glycine soja]
9 Hb_006185_050 0.0867023244 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
10 Hb_000392_300 0.0881758845 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
11 Hb_006065_020 0.0887023019 - - -
12 Hb_144787_030 0.0895138259 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
13 Hb_000976_320 0.0903933845 - - UPF0061 protein azo1574 [Morus notabilis]
14 Hb_010222_080 0.090458479 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
15 Hb_000359_330 0.09287288 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033834_010 0.0934954882 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_000946_120 0.0943393053 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000808_250 0.0950440402 - - PREDICTED: uncharacterized protein LOC105647419 [Jatropha curcas]
19 Hb_004162_280 0.0962054878 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
20 Hb_000861_070 0.0966002387 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000465_470 Hb_000465_470 Hb_001541_260 Hb_001541_260 Hb_000465_470--Hb_001541_260 Hb_106552_050 Hb_106552_050 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_000663_040 Hb_000663_040 Hb_000465_470--Hb_000663_040 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000032_490 Hb_000032_490 Hb_000465_470--Hb_000032_490 Hb_144787_030 Hb_144787_030 Hb_001541_260--Hb_144787_030 Hb_001541_260--Hb_000236_100 Hb_000139_250 Hb_000139_250 Hb_001541_260--Hb_000139_250 Hb_001541_260--Hb_000032_490 Hb_000946_120 Hb_000946_120 Hb_001541_260--Hb_000946_120 Hb_008803_090 Hb_008803_090 Hb_106552_050--Hb_008803_090 Hb_000976_320 Hb_000976_320 Hb_106552_050--Hb_000976_320 Hb_001926_030 Hb_001926_030 Hb_106552_050--Hb_001926_030 Hb_002192_080 Hb_002192_080 Hb_106552_050--Hb_002192_080 Hb_000808_250 Hb_000808_250 Hb_106552_050--Hb_000808_250 Hb_004055_150 Hb_004055_150 Hb_106552_050--Hb_004055_150 Hb_004162_280 Hb_004162_280 Hb_000236_100--Hb_004162_280 Hb_000236_100--Hb_144787_030 Hb_005245_130 Hb_005245_130 Hb_000236_100--Hb_005245_130 Hb_002027_260 Hb_002027_260 Hb_000236_100--Hb_002027_260 Hb_010222_080 Hb_010222_080 Hb_000236_100--Hb_010222_080 Hb_000244_300 Hb_000244_300 Hb_000663_040--Hb_000244_300 Hb_000421_070 Hb_000421_070 Hb_000663_040--Hb_000421_070 Hb_001117_100 Hb_001117_100 Hb_000663_040--Hb_001117_100 Hb_005332_070 Hb_005332_070 Hb_000663_040--Hb_005332_070 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100 Hb_003656_160 Hb_003656_160 Hb_002301_220--Hb_003656_160 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010 Hb_002351_020 Hb_002351_020 Hb_000032_490--Hb_002351_020 Hb_021422_010 Hb_021422_010 Hb_000032_490--Hb_021422_010 Hb_000032_490--Hb_000946_120 Hb_000832_090 Hb_000832_090 Hb_000032_490--Hb_000832_090 Hb_000365_140 Hb_000365_140 Hb_000032_490--Hb_000365_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.124 95.5716 77.1696 36.0343 190.352 150.137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.0892 114.038 110.489 48.2352 38.7191

CAGE analysis