Hb_001117_100

Information

Type -
Description -
Location Contig1117: 65697-70335
Sequence    

Annotation

kegg
ID cic:CICLE_v10029508mg
description hypothetical protein
nr
ID ADR71283.1
description 40S ribosomal protein S16A [Hevea brasiliensis]
swissprot
ID P46293
description 40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1
trembl
ID I3NMP6
description 40S ribosomal protein S16A OS=Hevea brasiliensis GN=RPS16A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03534: 65677-66556
cDNA
(Sanger)
(ID:Location)		 011_C15.ab1: 69647-70327 , 026_N24.ab1: 69726-70360 , 029_P16.ab1: 69670-70304 , 051_C22.ab1: 69669-70357

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_100 0.0 - - 40S ribosomal protein S16A [Hevea brasiliensis]
2 Hb_000663_040 0.0823154655 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
3 Hb_011571_020 0.0855042543 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
4 Hb_005332_070 0.0896151867 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
5 Hb_000421_070 0.0911718737 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000019_210 0.0948724316 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
7 Hb_005993_040 0.0961525224 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
8 Hb_011609_100 0.0970928717 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
9 Hb_006185_050 0.0996182135 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
10 Hb_000141_060 0.1012018035 - - PREDICTED: uncharacterized protein LOC105632248 [Jatropha curcas]
11 Hb_002081_130 0.1039045213 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_005535_050 0.1042225423 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
13 Hb_003777_330 0.1057945619 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
14 Hb_011360_140 0.106122418 - - 40S ribosomal protein S19, putative [Ricinus communis]
15 Hb_005503_030 0.1071450439 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
16 Hb_000221_220 0.1073788534 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
17 Hb_001005_060 0.107434864 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
18 Hb_010661_030 0.1089831254 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
19 Hb_001934_030 0.1099185546 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
20 Hb_002043_190 0.11040528 - - rwd domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001117_100 Hb_001117_100 Hb_000663_040 Hb_000663_040 Hb_001117_100--Hb_000663_040 Hb_011571_020 Hb_011571_020 Hb_001117_100--Hb_011571_020 Hb_005332_070 Hb_005332_070 Hb_001117_100--Hb_005332_070 Hb_000421_070 Hb_000421_070 Hb_001117_100--Hb_000421_070 Hb_000019_210 Hb_000019_210 Hb_001117_100--Hb_000019_210 Hb_005993_040 Hb_005993_040 Hb_001117_100--Hb_005993_040 Hb_000244_300 Hb_000244_300 Hb_000663_040--Hb_000244_300 Hb_000663_040--Hb_000421_070 Hb_000663_040--Hb_005332_070 Hb_000465_470 Hb_000465_470 Hb_000663_040--Hb_000465_470 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100 Hb_011360_140 Hb_011360_140 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_011571_020--Hb_005993_040 Hb_001301_160 Hb_001301_160 Hb_011571_020--Hb_001301_160 Hb_011571_020--Hb_005332_070 Hb_000473_040 Hb_000473_040 Hb_011571_020--Hb_000473_040 Hb_005332_070--Hb_000473_040 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_005332_070--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_005332_070--Hb_012762_050 Hb_005332_070--Hb_003001_140 Hb_002603_120 Hb_002603_120 Hb_000421_070--Hb_002603_120 Hb_005188_050 Hb_005188_050 Hb_000421_070--Hb_005188_050 Hb_001677_210 Hb_001677_210 Hb_000421_070--Hb_001677_210 Hb_004931_070 Hb_004931_070 Hb_000421_070--Hb_004931_070 Hb_004491_010 Hb_004491_010 Hb_000421_070--Hb_004491_010 Hb_001811_050 Hb_001811_050 Hb_000019_210--Hb_001811_050 Hb_002043_190 Hb_002043_190 Hb_000019_210--Hb_002043_190 Hb_000019_210--Hb_005993_040 Hb_003050_080 Hb_003050_080 Hb_000019_210--Hb_003050_080 Hb_001489_060 Hb_001489_060 Hb_000019_210--Hb_001489_060 Hb_007576_040 Hb_007576_040 Hb_000019_210--Hb_007576_040 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
239.667 108.308 132.629 36.1303 264.326 228.398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.248 280.269 181.332 136.623 44.2536

CAGE analysis